View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_low_11 (Length: 243)
Name: NF14173_low_11
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23596463 - 23596239
Alignment:
| Q |
1 |
attgagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtacca |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596463 |
attgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtacca |
23596364 |
T |
|
| Q |
101 |
aggtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596363 |
aggtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatca |
23596264 |
T |
|
| Q |
201 |
ttggtttgtcagcagggccaggaat |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
23596263 |
ttggtttgtcagcagggccaggaat |
23596239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23587611 - 23587387
Alignment:
| Q |
1 |
attgagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtacca |
100 |
Q |
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|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
23587611 |
attgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtacca |
23587512 |
T |
|
| Q |
101 |
aggtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatca |
200 |
Q |
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|| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||||||||||||| |
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| T |
23587511 |
agataagcctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatca |
23587412 |
T |
|
| Q |
201 |
ttggtttgtcagcagggccaggaat |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
23587411 |
ttggtttgtcagcagggccaggaat |
23587387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 8017291 - 8017103
Alignment:
| Q |
1 |
attgagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtacca |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||| || |||||||| || ||||| |||||||| || || || || |||||||||||||| | |||| ||| |
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| T |
8017291 |
attgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccg |
8017192 |
T |
|
| Q |
101 |
aggtaagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagtt |
189 |
Q |
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|
|||||||| || || ||||| |||||| || || ||||| || || || || ||||||| ||||||||| ||||| |||||||||| |
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| T |
8017191 |
aggtaagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagtt |
8017103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 39985958 - 39986102
Alignment:
| Q |
23 |
gcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctcct |
122 |
Q |
| |
|
|||||||| ||||||||||| || || || || ||||| ||||| || || ||||| ||||||||||| | | ||||||||| || || || ||||| |
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| T |
39985958 |
gcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcac |
39986057 |
T |
|
| Q |
123 |
tcatcttcataagaaccatggaagatatctcttcagcagaaaatt |
167 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| |||| ||||| |
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|
| T |
39986058 |
gcatcttcattagcaccatggaagagatctcttcggcagcaaatt |
39986102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 8102973 - 8103046
Alignment:
| Q |
17 |
acaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaat |
90 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| || || || |||||||||||||| |
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| T |
8102973 |
acaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaat |
8103046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 17717812 - 17717662
Alignment:
| Q |
21 |
cggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctc |
120 |
Q |
| |
|
|||||||||||||| |||| || ||||| || ||||| ||||| || || |||||||||||| |||| || | ||||| ||| |||||||| ||||| |
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| T |
17717812 |
cggcatccttagtaacttgtatctgagaatcattaaagtaagcagggacagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctc |
17717713 |
T |
|
| Q |
121 |
cttcatcttcataagaaccatggaagatatctcttcagcagaaaattgctt |
171 |
Q |
| |
|
||||||| || ||||||||||| |||||||| |||| ||||||||| |
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|
| T |
17717712 |
acgcatcttccagagtaccatggaagagatctcttctgcagcaaattgctt |
17717662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12234979 - 12235067
Alignment:
| Q |
1 |
attgagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaa |
89 |
Q |
| |
|
|||||| |||| ||||||||| ||||| |||| |||| ||||| ||||| ||||| || ||||||||||| ||||| |||||||||| |
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| T |
12234979 |
attgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaa |
12235067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 4678432 - 4678350
Alignment:
| Q |
5 |
agtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt |
87 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||| ||||| ||||| ||||||||||||||||| || |||||| ||||||| |
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| T |
4678432 |
agtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattctt |
4678350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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