View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_low_2 (Length: 567)
Name: NF14173_low_2
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Original strand, 4030744 - 4031298
Alignment:
| Q |
9 |
gaagcaaagggaaatagtatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaa |
108 |
Q |
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| T |
4030744 |
gaagcaaagggaaatagtatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaa |
4030843 |
T |
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| Q |
109 |
agtatagtctataataagatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtact |
208 |
Q |
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| T |
4030844 |
agtatagtctataataagatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtact |
4030943 |
T |
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| Q |
209 |
caagaatctttgcaaggaagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattag |
308 |
Q |
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| T |
4030944 |
caagaatctttgcaaggaagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattag |
4031043 |
T |
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| Q |
309 |
aacaaaagtttgtacaagtcacaataaaactacggtatctgtccccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaa |
408 |
Q |
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| T |
4031044 |
aacaaaagtttgtacaattcacaataaaactacggtatctgtccccactcttgattaaatggacaaggttttaaggaaaatgataaatatagcgaaggaa |
4031143 |
T |
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| Q |
409 |
acaatcatgaagcaattgcgaataagtgttattggttgccaatccccaccactgggtgatttcagcaaattccaggactgaagtgattcca--------- |
499 |
Q |
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| T |
4031144 |
acaatcatgaagcaattgcaaataagtgttattggttgccaatccccacgactgggtgatttcagcaaattccaggactgaagtgattccatccgttatg |
4031243 |
T |
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| Q |
500 |
---ttttatcaaacacacgcccgcgagatttcacaaaaacaaattcgctatatat |
551 |
Q |
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| T |
4031244 |
tagttttatcaaacacgcgctcgcgagatttcacaaaaacaaattcgctatatat |
4031298 |
T |
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