View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_low_4 (Length: 457)
Name: NF14173_low_4
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Original strand, 564673 - 565111
Alignment:
| Q |
5 |
gagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtactggaatgattaaggtgatgtgaaacttgttaggatgaagatta |
104 |
Q |
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| T |
564673 |
gagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtactggaatgattaaggtgatgtgaaacttgttaggatgaagatta |
564772 |
T |
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| Q |
105 |
aggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattag |
204 |
Q |
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| T |
564773 |
aggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattag |
564872 |
T |
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| Q |
205 |
tttaggctctgatctgtgttaatggaaggttgatttggttaattaaataggataattaagacaagaacaaaacaaacggctagttgtcatgttgtacata |
304 |
Q |
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| T |
564873 |
tttaggctctgatccgtgttaatggaaggttgatttggttaattaaataagataattaagacaagaac--aacaaacggctagttgtcatgttgtacata |
564970 |
T |
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| Q |
305 |
tgatagtgtaaacaagagtaatttacactccttgatagtatataatatacaataccattaatttttgttgtgagcgatttaagaatccttaattggatcc |
404 |
Q |
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| T |
564971 |
tgatagtgtaaacaagagtaatttacactccatgatagtatataatatacaataccattaattcttgttgtgagcgatttaagaatccttaattggatcc |
565070 |
T |
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| Q |
405 |
atgattcactcttgatcttttcaagaattttgtcctctttg |
445 |
Q |
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| T |
565071 |
acgattcactcttgatcttttcaagaattttgtcctctttg |
565111 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 874139 - 874194
Alignment:
| Q |
155 |
gactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
210 |
Q |
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| T |
874139 |
gacttaaaccaaagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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