View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14173_low_5 (Length: 455)

Name: NF14173_low_5
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14173_low_5
NF14173_low_5
[»] chr4 (3 HSPs)
chr4 (7-437)||(27762146-27762576)
chr4 (304-353)||(14705233-14705282)
chr4 (304-353)||(16382675-16382724)
[»] scaffold0035 (1 HSPs)
scaffold0035 (289-353)||(56406-56470)
[»] chr8 (1 HSPs)
chr8 (304-349)||(24438334-24438379)
[»] chr6 (2 HSPs)
chr6 (304-349)||(22942907-22942952)
chr6 (304-349)||(23865351-23865396)
[»] chr3 (3 HSPs)
chr3 (304-349)||(5893733-5893778)
chr3 (304-349)||(18502361-18502406)
chr3 (289-353)||(3287169-3287233)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 27762146 - 27762576
Alignment:
Q  7 tcgaataatatctcaaggacgttcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatctgaacaataggaaacttgtt 106  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762146 tcgaataatgtctcaaggacgctcatttgtatttcataaaatgtaaaagaaacaaaaggaaaatatgattttaccgaatctgaacaataggaaacttgtt 27762245  T
Q  107 gctaagatattcttggcattcttgtagatccaatgcaacgaatttnnnnnnntggtttcaatgacacacagtaatcctaagaccaaatgactccctaaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762246 gctaagatattcttggcattcttgtagatccaatgcaacgaatttaaaaaaatggtttcaatgacacacagtaatcctaagaccaaatgactccctaaag 27762345  T
Q  207 tcaaatttatagcaacnnnnnnntaataggactcgttttatgtcacgattttacttaacttaattgattaatgaatgacttagcatgcacaaaatataca 306  Q
    ||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27762346 tcaaatttatagcaacaaaaaaataataggactcgttttatgtcacaattttacttaacttaattgattaatgaatgacttagcatgcacaaaatataca 27762445  T
Q  307 tggaggccgaatacaaacatgttgttcaacctcaaacaagactaaactcctcaacccgtttgatatgggagtgattttcgttctaccttatccacattat 406  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  27762446 tggaggccgaatacaaatatgttgttcaacctcaaacaagactaaactcctcaacccgtttggtatgggagtgattttcgttgtaccttatccacattat 27762545  T
Q  407 ttacacaactgtagtcatcttgccctgtttt 437  Q
    |||||||||||||||||| || |||||||||    
T  27762546 ttacacaactgtagtcatgttaccctgtttt 27762576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 14705233 - 14705282
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 353  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||||    
T  14705233 acatggaggctgaatacaaaccagttgttcaacctcaaagaagactaaac 14705282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 16382724 - 16382675
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 353  Q
    |||||||||| |||||||||| || | |||||||||||| ||||||||||    
T  16382724 acatggaggcggaatacaaacctgcttttcaacctcaaagaagactaaac 16382675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 56406 - 56470
Alignment:
Q  289 gcatgcacaaaatatacatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 353  Q
    ||||||| |||||  |||||||||| |||||||||| ||||||||||||||||  ||||||||||    
T  56406 gcatgcataaaattcacatggaggctgaatacaaacctgttgttcaacctcaacgaagactaaac 56470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 24438334 - 24438379
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 349  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  24438334 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 24438379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 22942907 - 22942952
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 349  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  22942907 acatggaggctgaatacaaaccagttgttcaacctcaaataagact 22942952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 23865351 - 23865396
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 349  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  23865351 acatggaggctgaatacaaaccagttgttcaacctcaaataagact 23865396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 5893778 - 5893733
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 349  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  5893778 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 5893733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 18502406 - 18502361
Alignment:
Q  304 acatggaggccgaatacaaacatgttgttcaacctcaaacaagact 349  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||    
T  18502406 acatggaggctgaatacaaaccagttgttcaacctcaaagaagact 18502361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 3287233 - 3287169
Alignment:
Q  289 gcatgcacaaaatatacatggaggccgaatacaaacatgttgttcaacctcaaacaagactaaac 353  Q
    |||||||||||||| || ||||||  |||||||||| ||| |||||||| |||| ||| ||||||    
T  3287233 gcatgcacaaaatacacttggaggttgaatacaaacttgtcgttcaaccacaaagaaggctaaac 3287169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University