View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14173_low_6 (Length: 438)
Name: NF14173_low_6
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 29703038 - 29703443
Alignment:
| Q |
15 |
caaagggaaggtggtgatattggtacaccagctgttcaaccacgaacagctcgtagaactacgactcaaaggaaaccggtgaaagaagctgaaagcacta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29703038 |
caaagggaaggtggtgatattggtacaccggctgttcaaccacgaacagctcgcagaactacgactcaaaggaaaccggtgaaagaagctgaaagcacta |
29703137 |
T |
|
| Q |
115 |
aggtttctacaagggttaaccgtgggggaagaggtggagttgctgaaggggaagttgagcaagagaacttagatgctaatgttgatgccggtactcctgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29703138 |
aggtttctacaagggttaaccgtgggggaagaggtggagttgctgaaggggaagttgagcaagagaacttagatgctaatgttgatgccggtactcctgc |
29703237 |
T |
|
| Q |
215 |
tgttgtgccaactagcaggagaagggttcctgctgtttctactcggagaaagaaggaagtgattgtgatagaagatgaagatgatgttgtgagtgaggtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29703238 |
tgttgtgccaactagcaggagaagggttccagctgtttctactcggagaaagaaggaagtgattgtgatagaagatgaagatgatgttgtgagtgaggtg |
29703337 |
T |
|
| Q |
315 |
caaggaaaggcaacggatgtggccaaaactcctgctgcagctcccagcagtagaaccagagctggtcgttctgctcggaacaaaactgagatctctgatg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29703338 |
caaggaaaggcaacggatgtggccaaaactcctgctgcagctcccagcagtaggaccagagctggtcgttctgttcggaacaaaactgagatctctgatg |
29703437 |
T |
|
| Q |
415 |
gaactt |
420 |
Q |
| |
|
|||||| |
|
|
| T |
29703438 |
gaactt |
29703443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University