View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14173_low_9 (Length: 331)
Name: NF14173_low_9
Description: NF14173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14173_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 41675315 - 41675011
Alignment:
| Q |
16 |
tttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaagttgagcttcttgttgaggaactcc |
115 |
Q |
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| T |
41675315 |
tttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaagtagagcttcttgttgaggaactcc |
41675216 |
T |
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| Q |
116 |
ttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgtatagtaatatccaaaactagctagctttcacactatgcaactgattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675215 |
ttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgtatagtaatatccaaaactagctagctttcacactatgcaactgattc |
41675116 |
T |
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| Q |
216 |
tttatttgtgtgtagggnnnnnnngggtactgtgataataagagagaagagaagttagtgagagtgtgtgagtattcaaagagatcatcaatgtttgcta |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675115 |
tttatttgtgtgtagggaaaaaaagggtactgtgataataagagagaagagaagttagtgagagtgtgtgagtattcaaagagatcatcaatgtttgcta |
41675016 |
T |
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| Q |
316 |
gtata |
320 |
Q |
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||||| |
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| T |
41675015 |
gtata |
41675011 |
T |
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