View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14174_high_6 (Length: 227)
Name: NF14174_high_6
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14174_high_6 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0576 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14620683 - 14620909
Alignment:
| Q |
1 |
acaagtctttcatagtagtagaaacctgcaacaccaattcacaattcatttaaagtcattaacaccgctcacaaacctaataaacccatcacacactaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14620683 |
acaagtctttcatagtagtagaaacctgcaacaccaattcacaattcatttaaagtcattaacaccgctcacaaacctaataaacccatcacacactaga |
14620782 |
T |
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| Q |
101 |
gattcattgtacattttgcatataaaacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14620783 |
gattcattgtacattttgcatataaaacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctg |
14620882 |
T |
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| Q |
201 |
caaataacaatcacaaatcatatcatt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14620883 |
caaataacaatcacaaatcatatcatt |
14620909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 2751105 - 2751204
Alignment:
| Q |
126 |
aacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||| ||||||| ||||||||||||| | |||||||| | | |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
2751105 |
aacaattacacttgaaaattcagattgatatgtaccaaatacttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
2751204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17709513 - 17709287
Alignment:
| Q |
1 |
acaagtctttcatagtagtagaaacctgcaacaccaattcacaattcatttaaagtcattaacaccgctcacaaacctaataaacccatcacacactaga |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17709513 |
acaagtctttcatagtagtagaaacctacaacaccaattcacaattcatttaaagtcattaacaccgctcacaaacctaataaacccatcacacattaga |
17709414 |
T |
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| Q |
101 |
gattcattgtacattttgcatataaaacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17709413 |
gattcattgtacattttgcgtataaaacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaacttttagctg |
17709314 |
T |
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| Q |
201 |
caaataacaatcacaaatcatatcatt |
227 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
17709313 |
caaataacaatcataaatcatatcatt |
17709287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 18204332 - 18204231
Alignment:
| Q |
126 |
aacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||| ||||||| ||||||| ||||||| |||||||| | | |||||| |||||||||||||||||||| || |||||| |||||||||||||||||||| |
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| T |
18204332 |
aacaattacacttgaaaattaagattcatatgtaccaaatacttcaattagcttaatcttatcaactttgagttgcaaagaacaatcacaaatcatatca |
18204233 |
T |
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| Q |
226 |
tt |
227 |
Q |
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|| |
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| T |
18204232 |
tt |
18204231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 5449 - 5350
Alignment:
| Q |
126 |
aacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||| ||||||| ||||||||||||| | |||||||| | | |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
5449 |
aacaattacacttgaaaattcagattgatatgtaccaaatacttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
5350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 3734990 - 3734891
Alignment:
| Q |
126 |
aacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||| ||||||| ||||||||||||| | |||||||| | | |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
3734990 |
aacaattacacttgaaaattcagattgatatgtaccaaatacttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
3734891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 15360465 - 15360366
Alignment:
| Q |
126 |
aacacttacactagaaaattcagattcagatgtaccacaaagttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||| ||||||| ||||||||||||| | |||||||| | | |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
15360465 |
aacaattacacttgaaaattcagattgatatgtaccaaatacttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
15360366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 28659273 - 28659216
Alignment:
| Q |
168 |
ttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
28659273 |
ttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
28659216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 20265441 - 20265384
Alignment:
| Q |
168 |
ttcaatcagcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatca |
225 |
Q |
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|||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
20265441 |
ttcaattagcttaaccttatcaactttgagctgcaaagaacaatcacaaatcatatca |
20265384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 4601404 - 4601352
Alignment:
| Q |
175 |
agcttaatcttatcaactttcagctgcaaataacaatcacaaatcatatcatt |
227 |
Q |
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||||||||||||| |||||| || |||||| ||||||||||| |||||||||| |
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| T |
4601404 |
agcttaatcttataaactttgagatgcaaagaacaatcacaagtcatatcatt |
4601352 |
T |
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