View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14174_low_1 (Length: 687)

Name: NF14174_low_1
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14174_low_1
NF14174_low_1
[»] chr1 (25 HSPs)
chr1 (1-289)||(2983304-2983598)
chr1 (438-628)||(15581518-15581713)
chr1 (466-641)||(41404053-41404228)
chr1 (438-630)||(42365838-42366031)
chr1 (438-672)||(42934173-42934411)
chr1 (441-635)||(34969739-34969928)
chr1 (313-406)||(2983183-2983276)
chr1 (439-653)||(7741058-7741278)
chr1 (466-596)||(16302721-16302851)
chr1 (517-642)||(48046434-48046559)
chr1 (441-569)||(50678176-50678314)
chr1 (438-649)||(39793539-39793745)
chr1 (438-569)||(49764854-49764985)
chr1 (488-615)||(42117145-42117272)
chr1 (490-563)||(23473768-23473841)
chr1 (490-566)||(19551222-19551298)
chr1 (491-616)||(50108993-50109120)
chr1 (488-615)||(49741322-49741449)
chr1 (487-565)||(50139607-50139685)
chr1 (438-474)||(48046404-48046440)
chr1 (591-630)||(50678132-50678171)
chr1 (491-620)||(35306749-35306878)
chr1 (608-652)||(7521247-7521291)
chr1 (598-629)||(16302661-16302692)
chr1 (488-534)||(38761093-38761139)
[»] scaffold0022 (2 HSPs)
scaffold0022 (438-672)||(44057-44301)
scaffold0022 (438-672)||(77778-78022)
[»] chr4 (17 HSPs)
chr4 (438-649)||(46944003-46944214)
chr4 (442-642)||(35292001-35292206)
chr4 (440-627)||(31227657-31227843)
chr4 (466-641)||(50859152-50859327)
chr4 (438-642)||(41223629-41223839)
chr4 (466-641)||(41809861-41810041)
chr4 (466-639)||(21263553-21263727)
chr4 (440-576)||(3121182-3121323)
chr4 (438-640)||(35033787-35033999)
chr4 (468-630)||(22405023-22405186)
chr4 (438-656)||(4292597-4292805)
chr4 (442-630)||(48084633-48084831)
chr4 (110-194)||(52525706-52525790)
chr4 (488-615)||(26861354-26861481)
chr4 (490-529)||(4342109-4342148)
chr4 (490-552)||(31151722-31151784)
chr4 (438-474)||(13779281-13779316)
[»] chr7 (9 HSPs)
chr7 (438-630)||(23417196-23417388)
chr7 (469-652)||(261707-261889)
chr7 (438-641)||(12633376-12633587)
chr7 (441-630)||(19625367-19625566)
chr7 (438-615)||(36657597-36657780)
chr7 (491-616)||(29428919-29429044)
chr7 (491-560)||(5925181-5925250)
chr7 (547-641)||(35759799-35759893)
chr7 (107-165)||(18941104-18941162)
[»] scaffold0127 (1 HSPs)
scaffold0127 (466-641)||(30107-30282)
[»] chr5 (16 HSPs)
chr5 (438-640)||(30084857-30085059)
chr5 (442-641)||(9159398-9159596)
chr5 (438-642)||(11617181-11617395)
chr5 (468-671)||(4943514-4943719)
chr5 (466-596)||(7505998-7506128)
chr5 (466-640)||(5247863-5248030)
chr5 (488-615)||(32233010-32233137)
chr5 (518-630)||(29293200-29293311)
chr5 (531-641)||(31933464-31933573)
chr5 (491-556)||(8961656-8961721)
chr5 (491-556)||(30699526-30699591)
chr5 (123-165)||(16351940-16351982)
chr5 (491-565)||(16597722-16597796)
chr5 (433-503)||(41483501-41483571)
chr5 (519-616)||(13191724-13191821)
chr5 (488-540)||(27868101-27868153)
[»] chr3 (25 HSPs)
chr3 (438-630)||(39439840-39440042)
chr3 (438-630)||(27011133-27011330)
chr3 (466-671)||(42029222-42029429)
chr3 (490-640)||(25045381-25045531)
chr3 (474-656)||(23420219-23420404)
chr3 (528-640)||(32278405-32278517)
chr3 (468-605)||(23466681-23466820)
chr3 (442-652)||(44713184-44713395)
chr3 (490-621)||(25909351-25909482)
chr3 (439-615)||(14567802-14567978)
chr3 (489-559)||(40026083-40026153)
chr3 (466-630)||(29765199-29765362)
chr3 (490-612)||(2230101-2230218)
chr3 (466-625)||(24374193-24374342)
chr3 (574-630)||(40024830-40024886)
chr3 (110-164)||(44712333-44712387)
chr3 (438-474)||(25045314-25045350)
chr3 (438-474)||(32278315-32278351)
chr3 (488-565)||(30813344-30813421)
chr3 (466-550)||(2266865-2266949)
chr3 (439-474)||(2230244-2230279)
chr3 (491-565)||(35231860-35231934)
chr3 (490-559)||(11414567-11414636)
chr3 (433-474)||(42029431-42029472)
chr3 (469-536)||(20189695-20189763)
[»] scaffold0110 (1 HSPs)
scaffold0110 (438-630)||(38553-38740)
[»] scaffold0224 (1 HSPs)
scaffold0224 (438-672)||(12360-12598)
[»] chr2 (13 HSPs)
chr2 (466-642)||(7444646-7444821)
chr2 (466-671)||(28219003-28219210)
chr2 (438-642)||(10354207-10354416)
chr2 (441-629)||(44246301-44246479)
chr2 (430-651)||(1499181-1499403)
chr2 (490-640)||(28199184-28199334)
chr2 (441-641)||(17999917-18000115)
chr2 (438-538)||(6476768-6476878)
chr2 (600-651)||(6479307-6479358)
chr2 (491-556)||(38022979-38023044)
chr2 (466-515)||(14329002-14329051)
chr2 (519-616)||(20717593-20717690)
chr2 (488-535)||(28555577-28555625)
[»] chr8 (15 HSPs)
chr8 (438-576)||(42025384-42025527)
chr8 (466-642)||(34924709-34924886)
chr8 (438-642)||(38679688-38679901)
chr8 (466-642)||(14112305-14112483)
chr8 (468-641)||(28873679-28873856)
chr8 (469-656)||(30800170-30800357)
chr8 (466-565)||(29844223-29844322)
chr8 (511-640)||(5358200-5358329)
chr8 (488-567)||(11354775-11354854)
chr8 (491-565)||(20989717-20989791)
chr8 (488-565)||(24944997-24945074)
chr8 (494-556)||(27325071-27325133)
chr8 (519-616)||(22531293-22531390)
chr8 (519-616)||(22535978-22536075)
chr8 (519-616)||(25993899-25993996)
[»] scaffold0039 (1 HSPs)
scaffold0039 (466-642)||(56901-57077)
[»] scaffold0227 (1 HSPs)
scaffold0227 (466-569)||(232-335)
[»] scaffold0011 (1 HSPs)
scaffold0011 (466-565)||(9265-9364)
[»] chr6 (7 HSPs)
chr6 (490-620)||(19694550-19694680)
chr6 (438-567)||(7365097-7365226)
chr6 (520-621)||(10871263-10871364)
chr6 (488-563)||(29063577-29063652)
chr6 (488-563)||(29118431-29118506)
chr6 (494-556)||(3639120-3639182)
chr6 (520-616)||(33091175-33091271)
[»] scaffold0097 (1 HSPs)
scaffold0097 (519-616)||(21430-21527)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 2983598 - 2983304
Alignment:
Q  1 gtctgttgtcgtttgtcgaaggaagaagctgctgatgaagagaagtcttcagtgtcatcttcgttgaaagtgctacggcggcggtgattataacgggagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2983598 gtctgttgtcgtttgtcgaaggaagaagctgctgatgaagagaagtcttcagtgtcatcttcgttgaaagtgctacggcggcggtgattataacgggagg 2983499  T
Q  101 tggcgccgccgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagttccagagacggaagtggtgggagaatgttggtggttt 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2983498 tggcgccaccgcagctgacggcgtggaagatgagacgacggagagaagcaatggaaagggagttccagagacggaagtggtgggagaatgttggtggttt 2983399  T
Q  201 tgaagagtggtggtggcgg------tggccgagaacgaggtttccgacgttgttccggtgatagtttgccattctccgatgaactacattgaagg 289  Q
     ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2983398 cgaagagtggtggtggcggtggcggtggccgagaacgaggtttccgacgttgttccggtgatagtttgccattctccgatgaactacattgaagg 2983304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 438 - 628
Target Start/End: Original strand, 15581518 - 15581713
Alignment:
Q  438 aggctatgtttggattgatggagagtg-----gtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgg 532  Q
    |||||||||||||||||||||||||||      ||||||||||||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  15581518 aggctatgtttggattgatggagagtgatggaatggaatggagtgggatatatccacattccattgtttggttttgtaaaaaagaaatggaatggaatgg 15581617  T
Q  533 aatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaat 628  Q
    | ||||||||||||||||||||||||||||| |||||   ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  15581618 agtgtgatggaacccattccatccaataccatccattctcccaattttccattccccccaatttggggtgtatccaatggaatggaacacaataat 15581713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 466 - 641
Target Start/End: Original strand, 41404053 - 41404228
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||     
T  41404053 tggaatggagtgggatggagccatgttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccact 41404152  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
    |||| | ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  41404153 cattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataagacaattacaa 41404228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 438 - 630
Target Start/End: Original strand, 42365838 - 42366031
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgttt-ggttttgtaaaaaatgaatggaatggaatggaatg 536  Q
    ||||||||||||||||||||||||||| ||||||||| ||| || || |||| ||||||||||| |||||| ||||||||||||||||||||||||| ||    
T  42365838 aggctatgtttggattgatggagagtgatggaatggaatggaatggaaccatgttccattgttttggttttataaaaaatgaatggaatggaatggagtg 42365937  T
Q  537 tgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    |||||||||||||||||||||||||||  ||||   |||||||| ||||||    ||||||||||||||| |||||||||||||||||||||||    
T  42365938 tgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatggaacacattaataa 42366031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 438 - 672
Target Start/End: Original strand, 42934173 - 42934411
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgt---aaaaaatgaatggaatggaatggaa 534  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| |  ||| ||||||||||||||||||||   ||||||  ||||||||||||||||     
T  42934173 aggctatgtttggattggtggagagtgatggaatggagtgggatgggaccacattccattgtttggttttgtaaaaaaaaaataatggaatggaatggag 42934272  T
Q  535 tgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagaca 634  Q
    |||||||||||||||||||||||||||||| ||||    ||||||||||||||   ||||||| |||||||| ||| ||||||||||||| ||||| | |    
T  42934273 tgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaacacatcaataatata 42934372  T
Q  635 attacaacattgtcccta-ctttcattccccaacttcat 672  Q
    ||||| |  |||||| ||  ||||||||||||| |||||    
T  42934373 attaccattttgtccttatttttcattccccaatttcat 42934411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 441 - 635
Target Start/End: Original strand, 34969739 - 34969928
Alignment:
Q  441 ctatgtttggattgatggagagtggtggaatggagtgggatagatccatatt-ccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtga 539  Q
    |||||||||||||||||||||||| ||||||||||||||||  | |||| || |||||||||| ||||||||||||||||||||||| | ||     |||    
T  34969739 ctatgtttggattgatggagagtgatggaatggagtgggatgaaaccatgtttccattgtttgattttgtaaaaaatgaatggaatgaagtg-----tga 34969833  T
Q  540 tggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaa 635  Q
    ||||||||||||||||||||||||| |||| |  ||| ||| |||||| | ||||||||||||||||||||||||| ||| |||||||||| ||||    
T  34969834 tggaacccattccatccaataccactcattaagtcaaattttcattcctc-caatttggggtgtatcaaatggaatagaatacattaataatacaa 34969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 2983276 - 2983183
Alignment:
Q  313 tgaaaagggaccgttgagtccacgtttttggtttattttcagtatttatatattggggagttatatattgtgtgtgagtttccatgcgactcac 406  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2983276 tgaaaagggaccgttgagtccccgtttttggtttattttcagtatttatatattggggagttatatattgtgtgtgagtttccatgtgactcac 2983183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 439 - 653
Target Start/End: Original strand, 7741058 - 7741278
Alignment:
Q  439 ggctatgtttggattgatggagagtggtggaatgga-----gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgga 533  Q
    ||||||||||||||||||||||||||||||||||||     |||||||  | |||| ||||||||||| |||||||||||||| ||||||||||||| ||    
T  7741058 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatgtaaccatgttccattgtttagttttgtaaaaaataaatggaatggaataga 7741157  T
Q  534 atgtgatggaacccattccatccaata-ccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataaga 632  Q
     |||||||||||||||||| ||||||| ||| |||||||||||| ||| |||| |   |||||||  ||| ||| |||| ||||||| ||||| |||| |    
T  7741158 gtgtgatggaacccattccttccaatacccatccatttaaccaaattttcatttcatccaatttgaagtgaatccaatgaaatggaaaacattgataata 7741257  T
Q  633 caattacaacattgtccctac 653  Q
    |||| ||||| ||| ||||||    
T  7741258 caatcacaactttgcccctac 7741278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 466 - 596
Target Start/End: Complemental strand, 16302851 - 16302721
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||  || |    
T  16302851 tggaatggagtgggataaaaccatattccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaactcattccatccaatgtcatc 16302752  T
Q  566 catttaaccaattttccattccccacaattt 596  Q
    |||||| | | |||| |||||||| ||||||    
T  16302751 catttatcaattttttcattccccccaattt 16302721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 517 - 642
Target Start/End: Original strand, 48046434 - 48046559
Alignment:
Q  517 gaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||| ||| ||||||||  ||||||||||||||| |||||||||    
T  48046434 gaatggaatggaatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccctaatttggggtgtatccaatggaatg 48046533  T
Q  617 gaacacattaataagacaattacaac 642  Q
    ||| |||| ||||| ||||| |||||    
T  48046534 gaatacataaataatacaatgacaac 48046559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 441 - 569
Target Start/End: Complemental strand, 50678314 - 50678176
Alignment:
Q  441 ctatgtttggattgatggagagtggtggaatgga----------gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaat 530  Q
    |||||||||||||||||||||||| |||||||||          ||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||    
T  50678314 ctatgtttggattgatggagagtgatggaatggaatgaaattgagtgggatggaaccatgttccattgtttggttttgtaaaaaaggaatggaatggaat 50678215  T
Q  531 ggaatgtgatggaacccattccatccaataccacccatt 569  Q
    ||| ||||||||||||||||| |||||||||||| ||||    
T  50678214 ggagtgtgatggaacccattctatccaataccactcatt 50678176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 649
Target Start/End: Original strand, 39793539 - 39793745
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    |||||||||||  |||| | |||||| |||||||||| |||||||   |||||||||||| ||| | ||||||||| |     ||| ||||||| | |||    
T  39793539 aggctatgtttaaattggtagagagtagtggaatggaatgggataagaccatattccattatttagatttgtaaaaga-----ggattggaatgaagtgt 39793633  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaatt 637  Q
     ||||||  ||||||||||||||  || ||||||  ||||||| ||||||    ||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  39793634 aatggaagtcattccatccaataaaactcatttagtcaatttttcattccttctaatttagggtgtatccaatgaaatggaacacattaataatacaatt 39793733  T
Q  638 acaacattgtcc 649  Q
    ||||||||||||    
T  39793734 acaacattgtcc 39793745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 569
Target Start/End: Original strand, 49764854 - 49764985
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||||||||  |   |||| |||||||||||| | |||| |||||||||||| ||||| ||||||||||| | |||||||||| | |    
T  49764854 aggctatgtttggattgatggaatggaatggagtggagtgggataaaaccatgttccattgtttgattttgcaaaaaatgaataggatggaatggagtat 49764953  T
Q  538 gatggaacccattccatccaataccacccatt 569  Q
    |||||||| |||| ||||||||||||| ||||    
T  49764954 gatggaactcatttcatccaataccactcatt 49764985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 615
Target Start/End: Complemental strand, 42117272 - 42117145
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcc 587  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||||||   ||||||| |||||||||||||||||||||      ||||||| ||||||    
T  42117272 atattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattcc 42117173  T
Q  588 ccacaatttggggtgtatcaaatggaat 615  Q
    |  ||| |||||||||||| ||||||||    
T  42117172 ctccaaattggggtgtatccaatggaat 42117145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 23473768 - 23473841
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaatacca 563  Q
    |||||||||||||| | |||||||| |||||||||||||||||||  |||||||| ||||||||||| ||||||    
T  23473768 attccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccatacca 23473841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 566
Target Start/End: Complemental strand, 19551298 - 19551222
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccaccc 566  Q
    ||||||| ||||||||||||||||||  ||||||||| ||| |||  ||||||||| ||||||||||||||||||||    
T  19551298 attccatcgtttggttttgtaaaaaagtaatggaatgaaatagaacatgatggaactcattccatccaataccaccc 19551222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 491 - 616
Target Start/End: Complemental strand, 50109120 - 50108993
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc--aataccacccatttaaccaattttccattccc 588  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||  |||||||| |||||||||||   |||||||||  |   |||||||  |||| ||    
T  50109120 ttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcccatataccaccctctcttccaatttatcatttcc 50109021  T
Q  589 cacaatttggggtgtatcaaatggaatg 616  Q
    | |||||||||||||||  |||||||||    
T  50109020 ctcaatttggggtgtatgcaatggaatg 50108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 488 - 615
Target Start/End: Original strand, 49741322 - 49741449
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcc 587  Q
    |||||||||||||||| |||| |||||  ||||||| ||| |||||||   ||||||| |||||||||||||||||||||      ||||||| ||||||    
T  49741322 atattccattgtttggatttgcaaaaagcgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattcc 49741421  T
Q  588 ccacaatttggggtgtatcaaatggaat 615  Q
    |  ||| |||||||||||| ||||||||    
T  49741422 cttcaaattggggtgtatccaatggaat 49741449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 565
Target Start/End: Complemental strand, 50139685 - 50139607
Alignment:
Q  487 catattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||| |||||||| |||||||||  | |||||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  50139685 catattccgttgtttggatttgtaaaattttaatggagtggaatggaataagatggaatccattccatcctataccacc 50139607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 48046404 - 48046440
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga 474  Q
    |||||||||||||||||||||||||||||||||||||    
T  48046404 aggctatgtttggattgatggagagtggtggaatgga 48046440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 630
Target Start/End: Complemental strand, 50678171 - 50678132
Alignment:
Q  591 caatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  50678171 caatttggggtgtatccaatggaatggaacacattaataa 50678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 620
Target Start/End: Complemental strand, 35306878 - 35306749
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccca 590  Q
    ||||||||||| | ||| |||||| || ||||||||| ||||||  |||||||| ||||||||| | ||||||||   ||   | ||||| ||||||||     
T  35306878 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctttctctatttttcattccccc 35306779  T
Q  591 caatttggggtgtatcaaatggaatggaac 620  Q
    |||||||||  ||||  |||||||||||||    
T  35306778 caatttgggaggtatgcaatggaatggaac 35306749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 652
Target Start/End: Original strand, 7521247 - 7521291
Alignment:
Q  608 aatggaatggaacacattaataagacaattacaacattgtcccta 652  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||    
T  7521247 aatggaatggaacacattaataacacaattacaattttgtcccta 7521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 629
Target Start/End: Complemental strand, 16302692 - 16302661
Alignment:
Q  598 gggtgtatcaaatggaatggaacacattaata 629  Q
    ||||||||||||||||||||||||||||||||    
T  16302692 gggtgtatcaaatggaatggaacacattaata 16302661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 534
Target Start/End: Complemental strand, 38761139 - 38761093
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaa 534  Q
    |||||| ||||||||| ||||| ||||||||||||| ||||||||||    
T  38761139 atattctattgtttggatttgttaaaaatgaatggagtggaatggaa 38761093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 438 - 672
Target Start/End: Complemental strand, 44301 - 44057
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga----------gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44301 aggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 44202  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  | ||||||||| ||||||||||    
T  44201 aatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaa 44102  T
Q  628 taagacaattacaacattgtccctactttcattccccaacttcat 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44101 taagacaattacaacattgtccctactttcattccccaacttcat 44057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 438 - 672
Target Start/End: Complemental strand, 78022 - 77778
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga----------gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  78022 aggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 77923  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  | ||||||||| ||||||||||    
T  77922 aatggagtgtgatggaacccattccatccaataccacccatttaaccaattttccattccccccaatttgaggtgttcccaatggaatgaaacacattaa 77823  T
Q  628 taagacaattacaacattgtccctactttcattccccaacttcat 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  77822 taagacaattacaacattgtccctactttcattccccaacttcat 77778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 438 - 649
Target Start/End: Original strand, 46944003 - 46944214
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||    
T  46944003 aggctatgtttggattggtggagtgtgatggaatggaatgggatagatcaacattccattgtttggttatgtaaaaaatgaatggaatggaatggagtgt 46944102  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaatt 637  Q
    |||||||| |||||||||||||||||| |||||   |||||||||||||| | |||||||||||||||| ||||||||| | ||||||||||| | ||||    
T  46944103 gatggaactcattccatccaataccactcattttgtcaattttccattccacccaatttggggtgtatccaatggaatgtagcacattaataatataatt 46944202  T
Q  638 acaacattgtcc 649  Q
    ||||||||||||    
T  46944203 acaacattgtcc 46944214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 442 - 642
Target Start/End: Original strand, 35292001 - 35292206
Alignment:
Q  442 tatgtttggattgatggagagtggtgga-----atggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatg 536  Q
    ||||||||||||||||||||||||||||     ||||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  35292001 tatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaaggaatggaatggaatggagtg 35292100  T
Q  537 tgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaat 636  Q
    ||||| ||| ||||| ||||||||||||||||| | |||| ||| |||| ||  |||||||||||||||| |||||||||||| |||| ||||| |||||    
T  35292101 tgatgtaactcattcaatccaataccacccattaagccaaattttcatttcctccaatttggggtgtatccaatggaatggaatacataaataatacaat 35292200  T
Q  637 tacaac 642  Q
     |||||    
T  35292201 gacaac 35292206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 440 - 627
Target Start/End: Original strand, 31227657 - 31227843
Alignment:
Q  440 gctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtga 539  Q
    ||||||||||||||| |  |||| |||||||||||| ||||||||  |||||| || ||||||||||||||||||||||||||||||||||| | |||||    
T  31227657 gctatgtttggattggtaaagagcggtggaatggagggggatagagtcatatttcaatgtttggttttgtaaaaaatgaatggaatggaatgaagtgtga 31227756  T
Q  540 tggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||  |||||||||||||||||| ||||||||||||||| |||||||| ||| |||| ||||||| |||||||||||| |||||||    
T  31227757 tggaaatcattccatccaataccactcatttaaccaatttttcattcccc-caaattggagtgtatccaatggaatggaatacattaa 31227843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 466 - 641
Target Start/End: Original strand, 50859152 - 50859327
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| ||  ||| ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||  |||||||||||||||||||    
T  50859152 tggaatggagtgggatggaagcatgttccattgtttggttttgtaaaaaaagagtgggatggaatggagtgtgatggaattcattccatccaataccacc 50859251  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
    |||||| |||| ||  |||||| | |||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50859252 catttagccaaattgtcattcctcccaatttggggtgtatccaatggaatggaacacattaataatacaattacaa 50859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 438 - 642
Target Start/End: Complemental strand, 41223839 - 41223629
Alignment:
Q  438 aggctatgtttggattgatggagagtg-----gtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgg 532  Q
    |||||||||||||||||||||||||||      ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  41223839 aggctatgtttggattgatggagagtgatggaatggaatggagtgggatatatccacatcccattgtttggttatgtaaaaaatgaatggaatggaatgg 41223740  T
Q  533 aatgtgatggaacccattccatcc-aataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataag 631  Q
    | |||||||||||||||||||||| |||||||| ||||||  || |||| |||||||| ||| |||||  ||||| |||||||||||||||  ||||||     
T  41223739 agtgtgatggaacccattccatccaaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaatggaacactctaataat 41223640  T
Q  632 acaattacaac 642  Q
    | |||||||||    
T  41223639 aaaattacaac 41223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 466 - 641
Target Start/End: Complemental strand, 41810041 - 41809861
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaat-----gaatggaatggaatggaatgtgatggaacccattccatccaata 560  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||   |||    
T  41810041 tggaatggagtgggatagagtcatgttccattgtttggttttgtaaaaaaatagtggaattgaatggaatggaatgtgatggaacccattccatgatata 41809942  T
Q  561 ccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
    |||| |||| | ||||||||||||||||| ||||||||| |||||  ||||||||||||| ||||||||||||||||||||    
T  41809941 ccactcattcatccaattttccattccccccaatttgggatgtattcaatggaatggaacgcattaataagacaattacaa 41809861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 466 - 639
Target Start/End: Complemental strand, 21263727 - 21263553
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||     
T  21263727 tggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatgggatggagtgtgatggaacccattccatccaataccact 21263628  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa-cacattaataagacaattac 639  Q
    ||||    ||||||||||||||   |||||||||||||||| ||||||||| || ||||||||||| | ||||||    
T  21263627 cattccttcaattttccattccatccaatttggggtgtatcgaatggaatgaaaccacattaataatataattac 21263553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 440 - 576
Target Start/End: Original strand, 3121182 - 3121323
Alignment:
Q  440 gctatgtttggattgatggagagtggtgga-----atggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaa 534  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||     
T  3121182 gctatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaaagaatggaatggaatggag 3121281  T
Q  535 tgtgatggaacccattccatccaataccacccatttaaccaa 576  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||    
T  3121282 tgtgatggaactcattccatccaataccatccattaaaccaa 3121323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 438 - 640
Target Start/End: Complemental strand, 35033999 - 35033787
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatc----------catattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    ||||||||||||||||||||||||||||||||||||| ||| || | |           || ||||||||||||||||||| ||||    ||||||||||    
T  35033999 aggctatgtttggattgatggagagtggtggaatggaatggaatgggttggaataaagtcagattccattgtttggttttgcaaaattgtaatggaatgg 35033900  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||| | ||| || || |||||| ||||||||||||||||||||    
T  35033899 aatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattaggatgtatccaatggaatggaacacattaa 35033800  T
Q  628 taagacaattaca 640  Q
    |||  ||||||||    
T  35033799 taacccaattaca 35033787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 468 - 630
Target Start/End: Original strand, 22405023 - 22405186
Alignment:
Q  468 gaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccaccca 567  Q
    ||||| |||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||  ||    
T  22405023 gaatgcagtgggatggagccacattccattgtttggttttgtaaaaaaaggatggaatggaatggagtgtgatggaactcattccatccaataccaatca 22405122  T
Q  568 tttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa-cacattaataa 630  Q
    ||    |||||||||||||| | |||||||| ||||||| |||||||||||| |||||||||||    
T  22405123 ttccttcaattttccattccacccaatttggagtgtatccaatggaatggaaccacattaataa 22405186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 438 - 656
Target Start/End: Complemental strand, 4292805 - 4292597
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||| || ||||| ||||||||||| ||      |||||  ||||||||||||||||| ||||||  |||||||||||||||  |||    
T  4292805 aggctatgtttggattggtgaagagtagtggaatggagcggc-----tccat--tccattgtttggttttgcaaaaaagtaatggaatggaatggtgtgt 4292713  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaatt 637  Q
    |||||||| ||||||||||||||||||   |||||| | ||||||||||||| ||||||||   ||||| ||||||||  ||||||||||||| ||||||    
T  4292712 gatggaactcattccatccaataccactattttaactagttttccattcccctcaatttgg---gtatccaatggaatataacacattaataatacaatt 4292616  T
Q  638 acaacattgtccctacttt 656  Q
    ||||  |||||||||||||    
T  4292615 acaattttgtccctacttt 4292597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 442 - 630
Target Start/End: Original strand, 48084633 - 48084831
Alignment:
Q  442 tatgtttggattgatggagagtggtggaatgga-----gtgggatagatccatattccattgtttggttttgtaaaaaat-----gaatggaatggaatg 531  Q
    |||||||||||||||||||||||||||||||||     |||||||  | ||| |||||||||||||||||||||||||||     |||| ||||||||||    
T  48084633 tatgtttggattgatggagagtggtggaatggaatggagtgggatgaaaccacattccattgtttggttttgtaaaaaattaatagaattgaatggaatg 48084732  T
Q  532 gaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    || | | ||||||| |||| ||||||||||||| ||||||||||||||| |||||||| |||||||||  ||||   ||||||||||| ||| ||||||    
T  48084733 gagtcttatggaactcatttcatccaataccactcatttaaccaatttttcattccccccaatttgggaggtatacgatggaatggaatacaataataa 48084831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 52525706 - 52525790
Alignment:
Q  110 cgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagttccagagacggaagtggtgggagaatgttgg 194  Q
    |||||||||||||||||||| |||||||||||||  |||| |||||||||||||| ||||||||| |||||||||||||| ||||    
T  52525706 cgcagctgacggcgtggaaggtgagacgacggaggaaggcaatggaaagggagtttcagagacggtagtggtgggagaatattgg 52525790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 615
Target Start/End: Complemental strand, 26861481 - 26861354
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcc 587  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||||||   ||||||| |||||||||||||||||||||      ||||||| ||||||    
T  26861481 atattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattcc 26861382  T
Q  588 ccacaatttggggtgtatcaaatggaat 615  Q
    |  ||| |||||||||||| ||||||||    
T  26861381 ctccaaattggggtgtatccaatggaat 26861354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 529
Target Start/End: Complemental strand, 4342148 - 4342109
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaa 529  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  4342148 attccattgtttggttttgtaaaaaagtaatggaatggaa 4342109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 552
Target Start/End: Original strand, 31151722 - 31151784
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattcc 552  Q
    ||||||||||||   |||||||||||||||| |||||||||||||  | |||||| |||||||    
T  31151722 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaatccattcc 31151784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 13779281 - 13779316
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga 474  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13779281 aggctatgtt-ggattgatggagagtggtggaatgga 13779316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 438 - 630
Target Start/End: Complemental strand, 23417388 - 23417196
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||| ||||| | |    
T  23417388 aggctatgtttggattgatggagagtgatggaatggagtgggatggaaccatgttccattgtttggttttgtaaaaaaggaatggaatggcatggagtat 23417289  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    ||||||||||||||||||||||||||| ||||   |||||||| ||||||   |||||||||||||||| |||||||||||||||||||||||    
T  23417288 gatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatggaacacattaataa 23417196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 469 - 652
Target Start/End: Complemental strand, 261889 - 261707
Alignment:
Q  469 aatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccat 568  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||| || ||||||||||||| ||||||||||| |||||||||| ||||| || |||    
T  261889 aatggagtgggatagagctatattccattgtttgattttgtaaaaaaaga-tggaatggaatgggatgtgatggaatccattccatcaaatacaactcat 261791  T
Q  569 ttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaacattgtcccta 652  Q
    |||  |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||  |||||||||    
T  261790 ttactcaattttccattcccctcaatttggggtgtatccaatgaaatggaacacattaataacacaattacaattttgtcccta 261707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 438 - 641
Target Start/End: Original strand, 12633376 - 12633587
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaa-aaat----gaatggaatggaatgg 532  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||  ||| ||||||||||||||||||||||| ||||    |||||||||||| |||    
T  12633376 aggctatgtttggattggtggagagtgatggaatggtgtgggatagggccacattccattgtttggttttgtaaacaaataatggaatggaatggagtgg 12633475  T
Q  533 aatgtgatggaacccattccatc---caataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaata 629  Q
    | ||||||||||| |||||||||   ||||||||| |||||| ||||||||||||||| | ||| || ||||||||| ||||||||| || |||||||||    
T  12633476 agtgtgatggaactcattccatcgaccaataccactcatttagccaattttccattcctcccaaattagggtgtatccaatggaatgaaatacattaata 12633575  T
Q  630 agacaattacaa 641  Q
    | ||||||||||    
T  12633576 atacaattacaa 12633587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 441 - 630
Target Start/End: Original strand, 19625367 - 19625566
Alignment:
Q  441 ctatgtttggattgatggagagtggtggaatggagtgggat----------agatccatattccattgtttggttttgtaaaaaatgaatggaatggaat 530  Q
    |||||||||||||||||||||||||||||||||| ||| ||          |||  || ||| ||||||||||||||| |||||   |||||||||||||    
T  19625367 ctatgtttggattgatggagagtggtggaatggaatggaatgggatggaatagagtcagatttcattgtttggttttgcaaaaatgtaatggaatggaat 19625466  T
Q  531 ggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    |||||||||||||||  ||||||||||||||||| |||| | ||||||||||||||| | ||| ||| |||||||| ||||| |||||||||||||||||    
T  19625467 ggaatgtgatggaactaattccatccaataccactcattcatccaattttccattcctcccaaattgtggtgtatccaatgggatggaacacattaataa 19625566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 438 - 615
Target Start/End: Complemental strand, 36657780 - 36657597
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga-----gtgggatagatccatattccattgtttggttttgtaaaaaatgaa-tggaatggaatg 531  Q
    ||||||| ||||||||||||||||||| |||||||||     ||||||| || |||| |||||||||||||||||||||||||  || ||||||| || |    
T  36657780 aggctatatttggattgatggagagtgatggaatggaatggggtgggatggaaccatgttccattgtttggttttgtaaaaaaaaaaatggaatgaaaag 36657681  T
Q  532 gaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaat 615  Q
     | |||||||||||||||||||||||||||||  ||||||||||  ||| || ||| | |||||||||||||||| ||||||||    
T  36657680 aagtgtgatggaacccattccatccaataccattcatttaaccagattttcaatccacccaatttggggtgtatccaatggaat 36657597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 491 - 616
Target Start/End: Original strand, 29428919 - 29429044
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccca 590  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||  |||||||| ||||||||||| ||| ||| |  |   |||||||  |||||||      
T  29428919 ttccattgtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctc 29429018  T
Q  591 caatttggggtgtatcaaatggaatg 616  Q
    |||||||||||||||  |||||||||    
T  29429019 caatttggggtgtatgcaatggaatg 29429044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 560
Target Start/End: Complemental strand, 5925250 - 5925181
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaata 560  Q
    |||||||||||||||||||||||| |  |||| ||||||| |||| |||||||| |||||||||||||||    
T  5925250 ttccattgtttggttttgtaaaaagtatatggtatggaatagaatatgatggaatccattccatccaata 5925181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 641
Target Start/End: Original strand, 35759799 - 35759893
Alignment:
Q  547 cattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
    |||||||||||||||||| |||| |  |||||||  || || | |||  ||||||||||  |||||||||||||||||||||||  |||||||||    
T  35759799 cattccatccaataccactcattcattcaatttttaatccctcccaaactggggtgtatgcaatggaatggaacacattaataattcaattacaa 35759893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 18941104 - 18941162
Alignment:
Q  107 cgccgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagttc 165  Q
    |||| ||||||||| ||||||||||||||| |||||| ||||| ||||| || ||||||    
T  18941104 cgccacagctgacgacgtggaagatgagacaacggagggaggcaatggagagagagttc 18941162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 466 - 641
Target Start/End: Complemental strand, 30282 - 30107
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||     
T  30282 tggaatggagtgggatggagccatgttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccact 30183  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
    |||| | ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  30182 cattcatccaattttccattccccccaatttggggtgtatccaatgaaatggaacacattaataagacaattacaa 30107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 438 - 640
Target Start/End: Original strand, 30084857 - 30085059
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||  || ||||||||||||||||||| ||||    ||||||||||||||||||||    
T  30084857 aggctatgtttggattgatggagagtggtggaatgggatggaatagagtcagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgt 30084956  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaatt 637  Q
    |||||||| |||||||||||||||||| |||| | ||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||  |||||    
T  30084957 gatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaatggaacacattaataactcaatt 30085056  T
Q  638 aca 640  Q
    |||    
T  30085057 aca 30085059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 442 - 641
Target Start/End: Original strand, 9159398 - 9159596
Alignment:
Q  442 tatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatg 541  Q
    ||||||||||||| || |||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  9159398 tatgtttggattggtgaagagtgatgga-tggagtgggatagagccatgttccattgtttggttttgtaaaaaa--aatggaaaggaatggaatgtgatg 9159494  T
Q  542 gaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgt--atcaaatggaatggaacacattaataagacaattac 639  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||  |||||| |||||  ||| ||| |||||||||||||| |||| ||| ||||    
T  9159495 gaacccattccatccaataccacccatttatccaatcttccattccccctaatttgaggtgtgcatccaatagaatggaacacattgataatacagttac 9159594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 438 - 642
Target Start/End: Original strand, 11617181 - 11617395
Alignment:
Q  438 aggctatgtttggattgatggagagtggtgga----------atggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  11617181 aggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaatgaatggaatgg 11617280  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||| ||||||||||| ||||||||||||||||||||||| | |||| ||| |||||||| ||| || | ||||||| |||||||||||| |||| ||    
T  11617281 aatggagtgtgatggaactcattccatccaataccacccattaagccaaattttcattccccccaaattagtgtgtatccaatggaatggaatacataaa 11617380  T
Q  628 taagacaattacaac 642  Q
    ||| ||||| |||||    
T  11617381 taatacaatgacaac 11617395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 468 - 671
Target Start/End: Original strand, 4943514 - 4943719
Alignment:
Q  468 gaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccaccca 567  Q
    |||||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  4943514 gaatggagtgggatggagccatattccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactca 4943613  T
Q  568 tttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa-cacattaataagacaattacaacattgtccctac-tttcattcccca 665  Q
    ||    |||||||||||||| | ||||||||||||| || |||||||||||| ||||||||||| | |||||| |  ||||||  || ||||||||||||    
T  4943614 ttccttcaattttccattccacccaatttggggtgtttccaatggaatggaaccacattaataatataattaccattttgtcctcacttttcattcccca 4943713  T
Q  666 acttca 671  Q
    | ||||    
T  4943714 atttca 4943719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 466 - 596
Target Start/End: Complemental strand, 7506128 - 7505998
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||| ||| || |||||||||| | |||||||||||||||||     
T  7506128 tggaatggagtgggataaagccacattccattgtttggttttgtaaaaaattaatggaatgaaatagagtgtgatggaatcaattccatccaataccact 7506029  T
Q  566 catttaaccaattttccattccccacaattt 596  Q
    |||||||||||||||||||||||| ||||||    
T  7506028 catttaaccaattttccattccccccaattt 7505998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 466 - 640
Target Start/End: Complemental strand, 5248030 - 5247863
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||| ||||||||||||  || ||||||||||||||||||||||||||  ||        |||||||||||||||||||||||| ||||||||||||     
T  5248030 tggaattgagtgggatagagtcacattccattgtttggttttgtaaaaaaaaaaa-------aatggaatgtgatggaacccattcaatccaataccact 5247938  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattaca 640  Q
    |||| |||||||||||||||||   ||||||  |||||| | ||| ||||||||||||||||||| |||||||||    
T  5247937 cattcaaccaattttccattccatccaatttaaggtgtacccaatagaatggaacacattaataatacaattaca 5247863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 615
Target Start/End: Original strand, 32233010 - 32233137
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcc 587  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||||   ||||||| |||||||||||||||||||||      ||||||| ||||||    
T  32233010 atattccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattcc 32233109  T
Q  588 ccacaatttggggtgtatcaaatggaat 615  Q
    |  ||| |||||||||||| ||||||||    
T  32233110 ctccaaattggggtgtatccaatggaat 32233137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 518 - 630
Target Start/End: Original strand, 29293200 - 29293311
Alignment:
Q  518 aatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatgg 617  Q
    |||||||||||| ||| || ||||||||||| |||||||||| |||  |||| || ||| ||| |||||||| |||||||||| ||||| | ||||||||    
T  29293200 aatggaatggaacggagtgggatggaacccactccatccaatgccattcattaaatcaaattttcattccccccaatttgggg-gtatccagtggaatgg 29293298  T
Q  618 aacacattaataa 630  Q
    || ||||||||||    
T  29293299 aatacattaataa 29293311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 641
Target Start/End: Complemental strand, 31933573 - 31933464
Alignment:
Q  531 ggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    ||||||| ||||||| |||||||||||||||||  |||  || ||||||| ||||||||  |||  | |||||||  ||||||||| |||||||||||||    
T  31933573 ggaatgtaatggaactcattccatccaataccattcatccaatcaatttttcattcccct-aatcagaggtgtattcaatggaatgaaacacattaataa 31933475  T
Q  631 gacaattacaa 641  Q
     ||||||||||    
T  31933474 tacaattacaa 31933464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 8961656 - 8961721
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc 556  Q
    ||||||||||||| | | |||||||||| ||||||||| ||| || |||||||| |||||||||||    
T  8961656 ttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcc 8961721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 30699526 - 30699591
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc 556  Q
    ||||||||||||| | | |||||||||| ||||||||| ||| || |||||||| |||||||||||    
T  30699526 ttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcc 30699591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 16351940 - 16351982
Alignment:
Q  123 gtggaagatgagacgacggagagaggcgatggaaagggagttc 165  Q
    ||||||||||||||||||||| ||||||||||| || ||||||    
T  16351940 gtggaagatgagacgacggagggaggcgatggagagagagttc 16351982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 565
Target Start/End: Complemental strand, 16597796 - 16597722
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||| ||| |||||| || ||||||||| ||||||  |||||||| | |||| |||| ||||||||    
T  16597796 ttccattgtttggatttataaaaattggatggaatggcatggaacatgatggaatctattctatcccataccacc 16597722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 41483501 - 41483571
Alignment:
Q  433 ccttcaggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttgg 503  Q
    |||| ||||||||||||||||||||||  ||||||||||||| ||| ||| ||  | |||| |||||||||    
T  41483501 cctttaggctatgtttggattgatggaatgtggtggaatggaatggaataaattaaaattctattgtttgg 41483571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 13191821 - 13191724
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  13191821 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 13191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 27868101 - 27868153
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgat 540  Q
    |||||||||||||||| ||| | ||||||| ||||||||| ||||||| ||||    
T  27868101 atattccattgtttggattttttaaaaatggatggaatgggatggaatatgat 27868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 438 - 630
Target Start/End: Complemental strand, 39440042 - 39439840
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga----------gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    |||||||||||||||||||||||||||||||||||||          |||||||| | ||||||||||||||||||||||| |||||| |||||||||||    
T  39440042 aggctatgtttggattgatggagagtggtggaatggaatggaatggagtgggataaaaccatattccattgtttggttttgcaaaaaaagaatggaatgg 39439943  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||| |||||||||||| |||| ||    
T  39439942 aatggagtgtgatggaactcattccatccaataccacccattaaaccaaattttcattccccccaatttggggtgtatccaatggaatggaatacataaa 39439843  T
Q  628 taa 630  Q
    |||    
T  39439842 taa 39439840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 438 - 630
Target Start/End: Original strand, 27011133 - 27011330
Alignment:
Q  438 aggctatgtttggattgatggagagtg-----gtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgg 532  Q
    |||||||||||||||||||||||||||      |||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  27011133 aggctatgtttggattgatggagagtgatggaatggaatggagtgggatggaaccatgttccattgtttggttttgtaaaaaaggaatggaatggaatgg 27011232  T
Q  533 aatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    | |||||||||||||||||||||||||||||| ||||   |||||||| ||||||   |||||||||||||||| ||||||||| |||||||||||||    
T  27011233 agtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatccaatttggggtgtatccaatggaatgaaacacattaataa 27011330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 466 - 671
Target Start/End: Complemental strand, 42029429 - 42029222
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||     
T  42029429 tggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatggaatggagtatgatggaacccattccatccaataccact 42029330  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa-cacattaataagacaattacaacattgtcc-ctactttcattccc 663  Q
    ||||    ||||||| |||||| | |||||||||||||||| |||||||||||| ||||||||||| | |||||| |  |||||| | | ||||||||||    
T  42029329 cattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataatataattaccattttgtcctcaattttcattccc 42029230  T
Q  664 caacttca 671  Q
    ||| ||||    
T  42029229 caatttca 42029222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 490 - 640
Target Start/End: Original strand, 25045381 - 25045531
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccc 589  Q
    ||||||||||||||||||| ||||    |||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||| |    
T  25045381 attccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctc 25045480  T
Q  590 acaatttggggtgtatcaaatggaatggaacacattaataagacaattaca 640  Q
     ||| |||| ||||||| |||||||||||||||||||||||  ||||||||    
T  25045481 ccaaattggtgtgtatccaatggaatggaacacattaataactcaattaca 25045531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 474 - 656
Target Start/End: Original strand, 23420219 - 23420404
Alignment:
Q  474 agtgggatagatccatattccattgtttggttttgtaaaaaat--gaatggaatggaatggaatgtgatggaacccattccatccaataccacccattta 571  Q
    |||||||||||| || |||| |||||||||||||||||||||   |||| ||||||| |||| ||| ||||||| |||| |||||||||||||| |||||    
T  23420219 agtgggatagattcacattctattgtttggttttgtaaaaaaaaggaatagaatggagtggagtgtaatggaactcattacatccaataccacctattta 23420318  T
Q  572 accaattttcc-attccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaacattgtccctacttt 656  Q
    ||||||||||| ||||| | || | ||||||||||  |||| |||| ||||||||||||| ||||||||||  |||||||||||||    
T  23420319 accaattttccaattcctcccattgtggggtgtatgcaatgaaatgaaacacattaataacacaattacaattttgtccctacttt 23420404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 528 - 640
Target Start/End: Original strand, 32278405 - 32278517
Alignment:
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||| | ||| |||||||||||| |||||||| |||||||||||    
T  32278405 aatggaatgtgatggaactcattccatccaataccactcattcatccaattttccattcctcccaaattggggtgtatccaatggaattgaacacattaa 32278504  T
Q  628 taagacaattaca 640  Q
    |||  ||||||||    
T  32278505 taactcaattaca 32278517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 468 - 605
Target Start/End: Original strand, 23466681 - 23466820
Alignment:
Q  468 gaatggagtgggatagatccatattccattgtttggttttgtaaaaaatg-aatggaatggaatggaatgtgatggaacccattccatccaataccaccc 566  Q
    ||||| |||||||||||| || |||| ||||||||||||||||||||| | ||| |||||||||| | ||| ||||||| |||| ||||||||||||||     
T  23466681 gaatgaagtgggatagattcacattctattgtttggttttgtaaaaaaaggaatagaatggaatgtagtgtaatggaactcattgcatccaataccacct 23466780  T
Q  567 atttaaccaattttcca-ttccccacaatttggggtgtat 605  Q
    ||||||||||||||||| |||| | |||||||||||||||    
T  23466781 atttaaccaattttccagttcctcccaatttggggtgtat 23466820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 442 - 652
Target Start/End: Original strand, 44713184 - 44713395
Alignment:
Q  442 tatgtttggattgatggagagtggtggaatggagtgg-----gatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatg 536  Q
    ||||||||||||||||||||||||||||||||| |||     ||| || ||| |||||||||||| |||||||||||||| |||||||||              
T  44713184 tatgtttggattgatggagagtggtggaatggaatggagagggatggagccacattccattgtttagttttgtaaaaaattaatggaatg---------- 44713273  T
Q  537 tgatggaacccattccatcca-------ataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaata 629  Q
    ||||||||| |||||||||||       ||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| || |||     
T  44713274 tgatggaactcattccatccaaattccaataccactcatttaaccaatttttcattcccca-aatttggggtgtatctaatggaatggaacatatcaatt 44713372  T
Q  630 agacaattacaacattgtcccta 652  Q
    | | ||||||||  |||||||||    
T  44713373 atataattacaattttgtcccta 44713395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 490 - 621
Target Start/End: Original strand, 25909351 - 25909482
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccc 589  Q
    |||||||||||||||||||||| || ||||||||||| |||| ||| | ||||||| ||||||||||||||||||||| |   |||||||| ||||| ||    
T  25909351 attccattgtttggttttgtaataagtgaatggaatgaaatgaaatataatggaactcattccatccaataccacccactattccaatttttcattctcc 25909450  T
Q  590 acaatttggggtgtatcaaatggaatggaaca 621  Q
     |||||||||||||||  |||| |||||||||    
T  25909451 ccaatttggggtgtatgcaatgaaatggaaca 25909482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 439 - 615
Target Start/End: Original strand, 14567802 - 14567978
Alignment:
Q  439 ggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtg 538  Q
    |||||||||||||||| |||   ||| ||||||||||||| | | |   |||||||||||||||| |||| ||||| |||||||| |||||||||||       
T  14567802 ggctatgtttggattggtggtatgtgatggaatggagtggtacataattatattccattgtttggatttgcaaaaagtgaatggagtggaatggaataca 14567901  T
Q  539 atggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaat 615  Q
    ||||||| ||||||||||||||||| |||      ||||||| |||||||| |||||||||||||||| ||||||||    
T  14567902 atggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaat 14567978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 559
Target Start/End: Complemental strand, 40026153 - 40026083
Alignment:
Q  489 tattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaat 559  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  40026153 tattccattgtttgattttgtaaaaaatgaatagaatggaatggaatgtgaaggaacctattccatccaat 40026083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 466 - 630
Target Start/End: Complemental strand, 29765362 - 29765199
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||||||  | | | |||||||||||||| ||||||||| || ||||||||||||||||   |||||||| | ||||||||||||||||||    
T  29765362 tggaatggagtgggatgaacctagattccattgtttggctttgtaaaacat-aatggaatggaatggagcatgatggaatcaattccatccaataccacc 29765264  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
      |||  |||| ||| |||| |||  ||||||||||||||  |||||||| |||| ||| |||||    
T  29765263 attttctccaaattttcattaccccaaatttggggtgtatgcaatggaatcgaacccataaataa 29765199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 490 - 612
Target Start/End: Complemental strand, 2230218 - 2230101
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccc 589  Q
    ||||| || ||||||||||||||||||||||| |||||||||     |||||||||||||| |||||||||||| ||||| |  ||||||| ||||| ||    
T  2230218 attcctttatttggttttgtaaaaaatgaatgaaatggaatg-----tgatggaacccattgcatccaataccatccattcactcaatttttcattctcc 2230124  T
Q  590 acaatttggggtgtatcaaatgg 612  Q
     |||||||| ||||||| |||||    
T  2230123 tcaatttggagtgtatccaatgg 2230101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 625
Target Start/End: Complemental strand, 24374342 - 24374193
Alignment:
Q  466 tggaatggagtgggatagatccata-ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccac 564  Q
    ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||| ||          |||||||||||||||||||    
T  24374342 tggaatgaaatgggatagatc-atagttccattgtttggttttgtaaaaaaggaatggagtgggatggtat----------ccattccatccaataccac 24374254  T
Q  565 ccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacatt 625  Q
    ||| ||| |||||||| ||||||   |||||| ||||||||| |  |||||||||||||||    
T  24374253 ccacttagccaatttttcattccatccaatttagggtgtatcgagcggaatggaacacatt 24374193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 630
Target Start/End: Complemental strand, 40024886 - 40024830
Alignment:
Q  574 caattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    ||||||| |||||| | |||||||||||||||| |||||||||||||||||||||||    
T  40024886 caatttttcattcctcccaatttggggtgtatccaatggaatggaacacattaataa 40024830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 44712333 - 44712387
Alignment:
Q  110 cgcagctgacggcgtggaagatgagacgacggagagaggcgatggaaagggagtt 164  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| || |||||    
T  44712333 cgcagctgacggcgtggaagatgagacgacggagggaggcaatggagagagagtt 44712387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 25045314 - 25045350
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga 474  Q
    |||||||||||||||||||||||||||||||||||||    
T  25045314 aggctatgtttggattgatggagagtggtggaatgga 25045350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 32278315 - 32278351
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga 474  Q
    |||||||||||||||||||||||||||||||||||||    
T  32278315 aggctatgtttggattgatggagagtggtggaatgga 32278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 565
Target Start/End: Complemental strand, 30813421 - 30813344
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||| | |||||||||||| |||||| ||| |||||||   ||||| | |||| ||||||||||||||    
T  30813421 atattccattgtttagatttgtaaaaaattaatggagtgggatggaatacaatggatctcatttcatccaataccacc 30813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Original strand, 2266865 - 2266949
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccatt 550  Q
    |||||||||||||||| |  ||| ||   |||||||||||||||||||||  | |||||| ||||||||||||||| ||| ||||    
T  2266865 tggaatggagtgggatggtgccacatcttattgtttggttttgtaaaaaagtagtggaattgaatggaatgtgatgaaactcatt 2266949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 474
Target Start/End: Complemental strand, 2230279 - 2230244
Alignment:
Q  439 ggctatgtttggattgatggagagtggtggaatgga 474  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2230279 ggctatgcttggattgatggagagtggtggaatgga 2230244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 565
Target Start/End: Complemental strand, 35231934 - 35231860
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||| | ||| |||||| || ||||||||| ||||||  |||||||| ||||||||| | ||||||||    
T  35231934 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccacc 35231860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 559
Target Start/End: Original strand, 11414567 - 11414636
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaat 559  Q
    |||| ||||||||| |||||||| | ||||| |||||||||||||  | ||||| |||||||||| ||||    
T  11414567 attctattgtttggatttgtaaatagtgaatagaatggaatggaacataatggagcccattccattcaat 11414636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 42029472 - 42029431
Alignment:
Q  433 ccttcaggctatgtttggattgatggagagtggtggaatgga 474  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  42029472 cctttaggctatgtttggattggtggtgagtggtggaatgga 42029431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 536
Target Start/End: Original strand, 20189695 - 20189763
Alignment:
Q  469 aatggagtgggatagatccatattccattgtttggttttgta-aaaaatgaatggaatggaatggaatg 536  Q
    |||| ||||||||||| |||| |||| ||||||||||||| | ||||| |||| ||||| |||||||||    
T  20189695 aatgaagtgggatagaaccatgttcctttgtttggttttgcataaaaaagaatagaatgcaatggaatg 20189763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 438 - 630
Target Start/End: Complemental strand, 38740 - 38553
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||||||     ||||||||||||| |||    
T  38740 aggctatgttttgattgatggagagtgatggaatggagtgggatggaaccatgttccattgtttggttttgtaaaaaa-----ggaatggaatggagtgt 38646  T
Q  538 gatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataa 630  Q
    ||||||||||||||||||||||||||| ||||   |||||||| ||||||   ||||||||| |||||| |||||||||||||||||||||||    
T  38645 gatggaacccattccatccaataccactcattcttccaatttttcattccattcaatttgggatgtatccaatggaatggaacacattaataa 38553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 438 - 672
Target Start/End: Complemental strand, 12598 - 12360
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaa---aaaatgaatggaatggaatggaa 534  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| |  ||| ||||||||||||||||||||||   ||||  ||||||||||||||||     
T  12598 aggctatgtttggattggtggagagtgatggaatggagtgggatgggaccacattccattgtttggttttgtaaaaaaaaaataatggaatggaatggag 12499  T
Q  535 tgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagaca 634  Q
    |||||||||||||||||||||||||||||| ||||    ||||||||||||||   ||||||| |||||||| ||| ||||||||||||| ||||| | |    
T  12498 tgtgatggaacccattccatccaataccactcattccttcaattttccattccatccaatttgaggtgtatccaatagaatggaacacatcaataatata 12399  T
Q  635 attacaacattgtcccta-ctttcattccccaacttcat 672  Q
    ||||| |  |||||| ||  ||||||||||||| |||||    
T  12398 attaccattttgtccttatttttcattccccaatttcat 12360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 466 - 642
Target Start/End: Complemental strand, 7444821 - 7444646
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  7444821 tggaatggagtgggatatatccacattccattgtttggttttctaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccact 7444722  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaac 642  Q
    |||||||||||||||| ||||||| ||| |||    |||||  |||||||||||||  ||||||| | |||||||||    
T  7444721 catttaaccaattttctattcccc-caaattgaaaggtatccgatggaatggaacattttaataataaaattacaac 7444646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 466 - 671
Target Start/End: Original strand, 28219003 - 28219210
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||     
T  28219003 tggaatggagtgggatggagccacattccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccact 28219102  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa-cacattaataagacaattacaacattgtcc-ctactttcattccc 663  Q
    ||||    ||||||| |||||| | |||||||||||||||| |||||||||||| ||||||||||| | |||||| |  |||||| | | ||||||||||    
T  28219103 cattccttcaatttttcattccacccaatttggggtgtatccaatggaatggaaccacattaataatataattaccattttgtcctcaattttcattccc 28219202  T
Q  664 caacttca 671  Q
    ||| ||||    
T  28219203 caatttca 28219210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 438 - 642
Target Start/End: Original strand, 10354207 - 10354416
Alignment:
Q  438 aggctatgtttggattgatggagagtggtgga-----atggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgg 532  Q
    ||||||||||||||||||||||||||||||||     ||||||| ||||| | |||||||| |||||||| ||||| |||||| ||||||||||||||||    
T  10354207 aggctatgtttggattgatggagagtggtggaatggaatggagtaggataaaaccatattctattgtttgattttgcaaaaaaggaatggaatggaatgg 10354306  T
Q  533 aatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataaga 632  Q
    | || |||| ||| ||||||||||||||||||||||| | |||| ||| |||||||| ||| ||  |||||||| |||||||||||| |||| ||||| |    
T  10354307 agtgcgatgaaactcattccatccaataccacccattaagccaaattttcattccccccaaattaaggtgtatccaatggaatggaatacataaataata 10354406  T
Q  633 caattacaac 642  Q
    |||| |||||    
T  10354407 caatgacaac 10354416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 441 - 629
Target Start/End: Original strand, 44246301 - 44246479
Alignment:
Q  441 ctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgat 540  Q
    |||||||||||||||||||||||| ||||||||| ||| |     ||||  ||||||||||||||||||| ||||     ||||||||||||| ||||||    
T  44246301 ctatgtttggattgatggagagtgatggaatggaatggaa-----ccatgctccattgtttggttttgtataaaa-----ggaatggaatggagtgtgat 44246390  T
Q  541 ggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaata 629  Q
    ||||| |||||||||||||||||| ||||    ||||||| ||||||   |||||||||||||||| ||||||||||||||||||||||    
T  44246391 ggaactcattccatccaataccactcattctttcaatttttcattccatccaatttggggtgtatccaatggaatggaacacattaata 44246479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 430 - 651
Target Start/End: Complemental strand, 1499403 - 1499181
Alignment:
Q  430 aaaccttcaggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgta-aaaaatgaatggaatgga 528  Q
    |||||||  ||||||||||| |||| |||| |||| ||||||||| || |||  | ||| |||| |||||||| ||||||| |||||  |||||||||||    
T  1499403 aaacctttgggctatgtttgaattggtggatagtgatggaatggattgagatgaagccacattctattgtttgcttttgtataaaaaaaaatggaatgga 1499304  T
Q  529 atggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaat 628  Q
    ||| | ||||||||||  |||||||||||||||||  |||| ||||||||||  ||| ||| ||||||| |||||||| ||||||||||||  |||| ||    
T  1499303 atgcagtgtgatggaattcattccatccaataccaatcattcaaccaattttttatttcccccaatttgaggtgtatccaatggaatggaatgcatttat 1499204  T
Q  629 aagacaattacaacattgtccct 651  Q
    || ||||||||||  ||||||||    
T  1499203 aatacaattacaattttgtccct 1499181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 490 - 640
Target Start/End: Complemental strand, 28199334 - 28199184
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccc 589  Q
    ||||||||||||||||||| ||||    |||||||| |||||||||||||||||||  ||||||||||||||||| |||| |  |||||||||||||| |    
T  28199334 attccattgtttggttttggaaaattgtaatggaatcgaatggaatgtgatggaacttattccatccaataccactcattcattcaattttccattcctc 28199235  T
Q  590 acaatttggggtgtatcaaatggaatggaacacattaataagacaattaca 640  Q
     ||| |||||||||||| ||||| |||||||||||||||||  ||||||||    
T  28199234 ccaaattggggtgtatccaatgggatggaacacattaataacccaattaca 28199184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 441 - 641
Target Start/End: Complemental strand, 18000115 - 17999917
Alignment:
Q  441 ctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatg---- 536  Q
    |||||||||||||||||||||||| ||||||||| ||| |     |||| || |||| ||||||||| | ||| ||||||||||| ||||||||||        
T  18000115 ctatgtttggattgatggagagtgatggaatggaatggaa-----ccatgtttcatt-tttggttttatgaaatatgaatggaattgaatggaatggagt 18000022  T
Q  537 -tgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaa 635  Q
     |||||||| |||||| |||||||||||| |||| | |||| ||| || ||||  ||||||||||||||||  ||||||||||| |||||||||| ||||    
T  18000021 gtgatggaatccattctatccaataccactcattaagccaaattttca-tccctccaatttggggtgtatccgatggaatggaatacattaataaaacaa 17999923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 438 - 538
Target Start/End: Original strand, 6476768 - 6476878
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatgga----------gtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||| ||| |||||||||||||  ||||||||| ||||| |||||||    
T  6476768 aggctatgtttggattgatggagagtggtggaatggaatggaatggggtgggatagagccacattccattgtttgaatttgtaaaagatgaacggaatgg 6476867  T
Q  528 aatggaatgtg 538  Q
    |||||| ||||    
T  6476868 aatggagtgtg 6476878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 6479307 - 6479358
Alignment:
Q  600 gtgtatcaaatggaatggaacacattaataagacaattacaacattgtccct 651  Q
    ||||||| |||||||||||||| | |||||| ||||||||||||||||||||    
T  6479307 gtgtatccaatggaatggaacatactaataatacaattacaacattgtccct 6479358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 38023044 - 38022979
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc 556  Q
    ||||||||||||| | | |||||||||| ||||||||| ||| || |||||||| |||||||||||    
T  38023044 ttccattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcc 38022979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 14329051 - 14329002
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaa 515  Q
    |||||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  14329051 tggaattgagtgagatagatacacatttcattgtttggttttgtaaaaaa 14329002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 20717690 - 20717593
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  20717690 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 20717593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 28555625 - 28555577
Alignment:
Q  488 atattccattgtt-tggttttgtaaaaaatgaatggaatggaatggaat 535  Q
    ||||||||||||| ||| |||||||| |||||||||||||| |||||||    
T  28555625 atattccattgttatggatttgtaaataatgaatggaatggtatggaat 28555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 438 - 576
Target Start/End: Complemental strand, 42025527 - 42025384
Alignment:
Q  438 aggctatgtttggattgatggagagtg-----gtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatgg 532  Q
    ||||| |||||||||||||||||||||      ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42025527 aggctttgtttggattgatggagagtgatggaatggaatggagtgggatatatccatattccattgtttggttttgtaaaaaatgaatggaattgaatgg 42025428  T
Q  533 aatgtgatggaacccattccatccaataccacccatttaaccaa 576  Q
    | |||||||||||||||||||||||||||||| |||||| ||||    
T  42025427 agtgtgatggaacccattccatccaataccactcatttagccaa 42025384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 466 - 642
Target Start/End: Complemental strand, 34924886 - 34924709
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc-aataccac 564  Q
    ||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34924886 tggaatggagtgggatatatccacatcccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaaataccac 34924787  T
Q  565 ccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaac 642  Q
     ||||||  || |||| |||||||| ||| |||||  ||||| |||||||||||||||  |||||| | |||||||||    
T  34924786 tcatttagtcattttttcattccccccaaattgggaggtatctaatggaatggaacactctaataataaaattacaac 34924709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 438 - 642
Target Start/End: Original strand, 38679688 - 38679901
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgg----------gatagatccatattccattgtttggttttgtaaaaaatgaatggaatgg 527  Q
    ||||||||||||||||||||||||||| ||||||||| |||          |||| |  ||| |||||||||||||||||||||||||||||| ||||||    
T  38679688 aggctatgtttggattgatggagagtgatggaatggaatggagtggagtgagataaaatcatgttccattgtttggttttgtaaaaaatgaatagaatgg 38679787  T
Q  528 aatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaa 627  Q
    |||||| ||||||||||| |||||||| |||||| || |||| | |||| ||| ||||||||| ||||||||||||||| ||| |||||||| |||||||    
T  38679788 aatggagtgtgatggaactcattccattcaatactactcattaagccaaattttcattcccca-aatttggggtgtatccaattgaatggaatacattaa 38679886  T
Q  628 taagacaattacaac 642  Q
    ||  ||||| |||||    
T  38679887 tagtacaatgacaac 38679901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 466 - 642
Target Start/End: Complemental strand, 14112483 - 14112305
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggtttt-gtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccac 564  Q
    ||||||||||||||||| ||||| || ||||||||||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  14112483 tggaatggagtgggatatatccacatcccattgtttggttatagtaaaaaatgaatggaatggaatagagtgtgatggaaccgattccatccaataccac 14112384  T
Q  565 ccatttaaccaattttccattccccac-aatttggggtgtatcaaatggaatggaacacattaataagacaattacaac 642  Q
     ||||||  || |||| |||||||| | || | |||  ||||| |||||||||||||||  |||||| | |||||||||    
T  14112383 tcatttagtcattttttcattcccccctaaatggggaggtatccaatggaatggaacactctaataataaaattacaac 14112305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 641
Target Start/End: Complemental strand, 28873856 - 28873679
Alignment:
Q  468 gaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc-- 565  Q
    |||| |||||||||||| ||| |||  ||||||||||||||||||||| ||||| ||||||||||  |||||||||||| ||||||||||||||||||      
T  28873856 gaatagagtgggatagaaccaaattttattgtttggttttgtaaaaaaggaatgaaatggaatggtgtgtgatggaacctattccatccaataccaccac 28873757  T
Q  566 -catttaacc-aattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaa 641  Q
     | || | || ||||||  ||||||  ||||||  |||||||  |||||||||||||||||||||||  |||||||||    
T  28873756 tctttcatccaaattttttattccctccaatttaaggtgtatttaatggaatggaacacattaataatccaattacaa 28873679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 469 - 656
Target Start/End: Original strand, 30800170 - 30800357
Alignment:
Q  469 aatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccat 568  Q
    ||||| ||| |||| ||| | |||| ||||||| ||||||||||||| || ||||||| ||| || ||||||||||| |||||||||||||||||  |||    
T  30800170 aatggggtgagatatatcaacattctattgtttagttttgtaaaaaaggagtggaatgaaatagagtgtgatggaactcattccatccaataccattcat 30800269  T
Q  569 ttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaacattgtccctacttt 656  Q
    ||||    ||||||||||  |  |||| |||||||||  ||| |||| |||||||||||||| | ||||| |||||| ||||||||||    
T  30800270 ttaaatttttttccattcttcctaattcggggtgtattcaatagaatagaacacattaataatataattagaacattctccctacttt 30800357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 29844223 - 29844322
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||| ||| ||  ||||||||||||||||| |||||||||  | |||||| || |||||||| |||||||| ||||||||||| ||||||||    
T  29844223 tggaatggagtgagatggaatcatattccattgtttggatttgtaaaattttaatggagtgaaatggaatatgatggaatccattccatcctataccacc 29844322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 640
Target Start/End: Complemental strand, 5358329 - 5358200
Alignment:
Q  511 aaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaat 610  Q
    |||||||| |||||| ||||| |||||||||||||  ||| ||||||||||||| ||| || | | |||| ||||| | | |||||| |||||||  |||    
T  5358329 aaaaatgagtggaatagaatgaaatgtgatggaacaaatttcatccaataccactcatatatctattttttcattctctataatttgaggtgtatgcaat 5358230  T
Q  611 ggaatggaacacattaataagacaattaca 640  Q
    ||||||||| ||| |||||| | |||||||    
T  5358229 ggaatggaatacaataataatataattaca 5358200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 567
Target Start/End: Original strand, 11354775 - 11354854
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccaccca 567  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||||||   |||||||  ||||||||||||||||||||    
T  11354775 atattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactgattccatccaataccaccca 11354854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 565
Target Start/End: Original strand, 20989717 - 20989791
Alignment:
Q  491 ttccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||   ||||||| ||||||||||| || |||||    
T  20989717 ttccattgtttaggtttataaaaaatgaatggaatggaatggaacaagatggaatccattccatcctatgccacc 20989791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 565
Target Start/End: Original strand, 24944997 - 24945074
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| |||| ||||| ||| | || |||||||||||   ||||||| |||||||||||||||||||    
T  24944997 atattccattgtttggatttgcaaaaagtgactcgagtggaatggaatacaatggaactcattccatccaataccacc 24945074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 27325071 - 27325133
Alignment:
Q  494 cattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc 556  Q
    |||||||||| | | |||||||||| ||||||||| ||| || |||||||| |||||||||||    
T  27325071 cattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcc 27325133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 22531390 - 22531293
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  22531390 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 22531293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 22536075 - 22535978
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  22536075 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 22535978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 25993996 - 25993899
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  25993996 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 25993899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 466 - 642
Target Start/End: Original strand, 56901 - 57077
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    ||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||||||||||||     
T  56901 tggaatggagtgggatatatccacatcccattgtttggttatgtaaaaaatgaatggaatggaatagagtgtgatggaaccaattccatccaataccact 57000  T
Q  566 catttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaacacattaataagacaattacaac 642  Q
    ||||||  || |||| |||||||| ||| |||||  ||||| |||||||||||||||  |||||| | |||||||||    
T  57001 catttagtcattttttcattccccccaaattgggaggtatccaatggaatggaacactctaataataaaattacaac 57077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 466 - 569
Target Start/End: Complemental strand, 335 - 232
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||| ||||||||| || ||| |||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||     
T  335 tggaattgagtgggatggagccacattccattgtttggttttgtaaaaatgggatggaatggaatggagtgtgatggaacccattccatccaataccact 236  T
Q  566 catt 569  Q
    ||||    
T  235 catt 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 466 - 565
Target Start/End: Complemental strand, 9364 - 9265
Alignment:
Q  466 tggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacc 565  Q
    |||||||||||||||| ||  ||||||||||||||||  |||||||||  | |||||| |||||| |||| |||||||| ||||||||||| || |||||    
T  9364 tggaatggagtgggatggaatcatattccattgtttgaatttgtaaaattttaatggagtggaattgaatatgatggaatccattccatcctatgccacc 9265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 620
Target Start/End: Complemental strand, 19694680 - 19694550
Alignment:
Q  490 attccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattcccc 589  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||||  | |||||| |||||||||||||| ||| | | |    | ||||| ||||||||    
T  19694680 attccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattcccc 19694581  T
Q  590 acaatttggggtgtatcaaatggaatggaac 620  Q
     |||||||||||| ||  |||||||||||||    
T  19694580 ccaatttggggtgcatgcaatggaatggaac 19694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 567
Target Start/End: Complemental strand, 7365226 - 7365097
Alignment:
Q  438 aggctatgtttggattgatggagagtggtggaatggagtgggatagatccatattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgt 537  Q
    ||||||||||||||||| ||    ||| ||||||||||||| | | |   |||||||||||||||| |||| ||||| |||||||| ||| |||||||      
T  7365226 aggctatgtttggattggtgatatgtgatggaatggagtggtacataattatattccattgtttggatttgcaaaaagtgaatggagtgggatggaatac 7365127  T
Q  538 gatggaacccattccatccaataccaccca 567  Q
     ||||| | |||||||||||||||||||||    
T  7365126 aatggatctcattccatccaataccaccca 7365097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 621
Target Start/End: Original strand, 10871263 - 10871364
Alignment:
Q  520 tggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatggaa 619  Q
    ||||||| |||||||  | |||||||||||| ||||||||||||| || |   |||| ||| |||||||| ||||||||| |||||  ||||||||||||    
T  10871263 tggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatggaatggaa 10871362  T
Q  620 ca 621  Q
    ||    
T  10871363 ca 10871364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 563
Target Start/End: Original strand, 29063577 - 29063652
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaatacca 563  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||||||   ||||| | |||||||||||||||||    
T  29063577 atattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29063652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 563
Target Start/End: Original strand, 29118431 - 29118506
Alignment:
Q  488 atattccattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatccaatacca 563  Q
    |||||||||||||||| |||| ||||| |||||||| ||| |||||||   ||||| | |||||||||||||||||    
T  29118431 atattccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29118506  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 3639120 - 3639182
Alignment:
Q  494 cattgtttggttttgtaaaaaatgaatggaatggaatggaatgtgatggaacccattccatcc 556  Q
    |||||||||| | | |||||||||| ||||||||| ||| || |||||||| |||||||||||    
T  3639120 cattgtttggatatttaaaaaatgagtggaatggagtggtatatgatggaatccattccatcc 3639182  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 616
Target Start/End: Original strand, 33091175 - 33091271
Alignment:
Q  520 tggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    |||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  33091175 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 33091271  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 616
Target Start/End: Complemental strand, 21527 - 21430
Alignment:
Q  519 atggaatggaatggaatgtgatggaacccattccatccaataccacccatttaaccaattttccattccccacaatttggggtgtatcaaatggaatg 616  Q
    ||||||||||||||||||  |||||||| ||||||| | ||||||| || |    ||||||  |||||||| |||||||||  ||||| |||||||||    
T  21527 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatg 21430  T

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