View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14174_low_3 (Length: 422)
Name: NF14174_low_3
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14174_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 40435875 - 40436263
Alignment:
| Q |
13 |
gaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcagagc |
112 |
Q |
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| T |
40435875 |
gaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggtttgataaaatgtgcagagc |
40435974 |
T |
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| Q |
113 |
ttaaaccaccacaagcaacatgaatgttatgttagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaatt |
212 |
Q |
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| T |
40435975 |
ttaaaccaccacaagcaacatgaatgt-----tagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaatt |
40436069 |
T |
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| Q |
213 |
gatctagctgaactttggtttatctgaacaataatcattaaccaaataaaacaaaacaaattgattgcaacacaaggaatnnnnnnnttctatgtgttct |
312 |
Q |
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| T |
40436070 |
gatctagctgaactttggtttatctgaacaataatcattaaccaaataaaacaaaacaaattgattgcaacacaagcaataaaaaaattctatgtgttct |
40436169 |
T |
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| Q |
313 |
gagaatttatattaattcattgatcacctgcaacaaaaaggagcaatcccagtaggaacaataacgaggttacgatcgaatgtgattccattga |
406 |
Q |
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| T |
40436170 |
gagaatttatattaattcattgatcacctgcaacaaaaaggagcaatcccagtaggaacaataacgaggttacgatcgaatgtgattccattga |
40436263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 40432296 - 40432456
Alignment:
| Q |
48 |
attaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcagagcttaaaccaccacaagcaacatgaatgttatgttag |
147 |
Q |
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| T |
40432296 |
attaacaagacaatcattatacttgaggcgtttgaaaatattagggttgataagacgtacagagccgaacttgccacaagcaacatgaatgtcaa----- |
40432390 |
T |
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| Q |
148 |
agattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaattg |
213 |
Q |
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| T |
40432391 |
aaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattg |
40432456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 14473274 - 14473354
Alignment:
| Q |
30 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcaga |
110 |
Q |
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| T |
14473274 |
ttgaagagtcttgccattattaacaagacaatccttattattgaggcgtttgaaaattgttgggttgataaaatgtgcaga |
14473354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 40912682 - 40912753
Alignment:
| Q |
30 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaa |
101 |
Q |
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| T |
40912682 |
ttgaagagtattgccattattcacatgaaaatcattattattgaggtgtttgaaaattgttgggttgataaa |
40912753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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