View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14174_low_4 (Length: 349)
Name: NF14174_low_4
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14174_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 26450276 - 26450597
Alignment:
| Q |
13 |
gagatgaatgaccgtctttcggctaaagaacttcagcttgtgttggtttatttctctcaagatggaagagattcatggtgtgctttagaggtttttgatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26450276 |
gagatgaatgaccgtctttcggctaaagaacttcagcttgtgttggtttatttctctcaagatggaagagattcatggtgtgctttggaggtttttgatt |
26450375 |
T |
|
| Q |
113 |
ggttaaggaaagagaacagggttgataaggaaactatggagttaatggttgctattatgtgtggttgggtgaagaaattgattatggaaaaacatggtgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26450376 |
ggttaaggaaagagaacagggttgataaggaaactatggagttaatggttgctattatgtgtggttgggtgaagaaattgattatggaaaaacatggtgt |
26450475 |
T |
|
| Q |
213 |
tggtgatgttgttgatcttcttgttgatatggattgtgttggtttgagacctggtttcagtatgattgagaaggttatttctttgtattgggatatgggg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26450476 |
tggtgatgttgttgatcttcttgttgatatggattgtgttggtttgagacctggtttcagtatgattgagaaggttatttctttgtattgggatatgggg |
26450575 |
T |
|
| Q |
313 |
gagaaagatggtgcttgtttgt |
334 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26450576 |
gagaaagatggtgcttgtttgt |
26450597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University