View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14174_low_6 (Length: 278)
Name: NF14174_low_6
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14174_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 11170127 - 11169878
Alignment:
| Q |
15 |
aaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaagttattt |
114 |
Q |
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| T |
11170127 |
aaaggggacctcatgggcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaaagttattt |
11170028 |
T |
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| Q |
115 |
cgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctaca |
214 |
Q |
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| T |
11170027 |
cgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctaca |
11169928 |
T |
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| Q |
215 |
tttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctg |
264 |
Q |
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| T |
11169927 |
tttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctg |
11169878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 11208950 - 11208700
Alignment:
| Q |
14 |
caaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaa-agttat |
112 |
Q |
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| T |
11208950 |
caaagggggcctcatgagcgtaataattcctaggaataccacgattcctaccaatatggaagatgtatacaccaccagtgaacccaaccaaaatagtt-t |
11208852 |
T |
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| Q |
113 |
ttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttcta |
212 |
Q |
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| T |
11208851 |
atcaatttccgtttatgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctccatgtccaaaaggtgatcaa |
11208752 |
T |
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| Q |
213 |
catttcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctg |
264 |
Q |
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| T |
11208751 |
aaattcgtggtcaacttccaaattaacgatgatggcatcttagacgtctctg |
11208700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 11275402 - 11275272
Alignment:
| Q |
124 |
tttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggt |
223 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
224 |
caacttccaaattaacgatgatggcatctta |
254 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatctta |
11275272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 11196189 - 11196117
Alignment:
| Q |
121 |
atgtttatgagggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctcc |
193 |
Q |
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| T |
11196189 |
atgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcc |
11196117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 11155746 - 11155697
Alignment:
| Q |
117 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
166 |
Q |
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| T |
11155746 |
attcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgct |
11155697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 11132471 - 11132411
Alignment:
| Q |
110 |
tatttcgattcatgtttatgagggtgagaggcaaataactaaggacaacaacttgctagga |
170 |
Q |
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| T |
11132471 |
tattttgattcatgtttacgagggtgaaagaaaaataactatggggaacaacttgctagga |
11132411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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