View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14174_low_7 (Length: 274)
Name: NF14174_low_7
Description: NF14174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14174_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 52816524 - 52816659
Alignment:
| Q |
121 |
tttatgaaatgtgaaagagttagggctttaaaactttcatcatgttaacaacatcctttcctttctttgagaaacaatgtcacaacaatgagtcttattg |
220 |
Q |
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| T |
52816524 |
tttatgaaatgtgaaagagttagggctttaaaactttcatcatgttaacaacatcctttcctttctttgagaaacaatgtcacaacaatgagtcttattg |
52816623 |
T |
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| Q |
221 |
aaccgattagactatctcaaactaaaaacgtaaacc |
256 |
Q |
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| T |
52816624 |
aaccgattagaccatctcaaactaaaaacgtaaacc |
52816659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 52815550 - 52815662
Alignment:
| Q |
17 |
aaactaattaagtggatgagattgatggaagatggtgataaagaggaaaggatgaaaaaagatatgttgttgaacgactcaaggaataagtgataatgtt |
116 |
Q |
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| T |
52815550 |
aaactaattaagtggatgagattgatggaagatggtgataaagaggaaatgatgaaaaaagatatgttgctgaacgactcaaggaataagtgataatgtt |
52815649 |
T |
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| Q |
117 |
agggtttatgaaa |
129 |
Q |
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| T |
52815650 |
agggtttatgaaa |
52815662 |
T |
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