View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14175_high_2 (Length: 492)

Name: NF14175_high_2
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14175_high_2
NF14175_high_2
[»] chr2 (9 HSPs)
chr2 (11-476)||(35024952-35025419)
chr2 (18-209)||(5007336-5007527)
chr2 (11-211)||(5953214-5953413)
chr2 (19-175)||(17539063-17539219)
chr2 (123-195)||(24310247-24310319)
chr2 (75-250)||(23497056-23497230)
chr2 (145-250)||(38115886-38115991)
chr2 (94-250)||(26024799-26024957)
chr2 (16-127)||(20559382-20559493)
[»] chr8 (13 HSPs)
chr8 (29-250)||(2537677-2537897)
chr8 (56-220)||(19237728-19237892)
chr8 (56-220)||(19310912-19311076)
chr8 (57-220)||(8970256-8970419)
chr8 (22-255)||(14154205-14154437)
chr8 (19-209)||(25481781-25481971)
chr8 (29-195)||(38312097-38312264)
chr8 (56-144)||(9492514-9492602)
chr8 (69-186)||(1154569-1154686)
chr8 (114-173)||(35427851-35427910)
chr8 (20-151)||(38141456-38141587)
chr8 (164-250)||(16435740-16435826)
chr8 (177-250)||(9492613-9492686)
[»] chr4 (18 HSPs)
chr4 (16-250)||(43472961-43473195)
chr4 (11-220)||(40756271-40756480)
chr4 (35-250)||(11422634-11422849)
chr4 (18-246)||(17318573-17318801)
chr4 (56-250)||(7103939-7104133)
chr4 (19-240)||(44527553-44527779)
chr4 (41-184)||(50429940-50430081)
chr4 (56-210)||(9741878-9742032)
chr4 (121-215)||(24389057-24389151)
chr4 (11-220)||(9745289-9745497)
chr4 (88-250)||(7109252-7109414)
chr4 (148-218)||(28033731-28033801)
chr4 (106-214)||(2059263-2059369)
chr4 (19-128)||(42181463-42181572)
chr4 (109-214)||(25143836-25143941)
chr4 (121-183)||(2577272-2577333)
chr4 (11-100)||(29907676-29907765)
chr4 (164-220)||(21947373-21947429)
[»] chr7 (9 HSPs)
chr7 (16-220)||(31001596-31001796)
chr7 (11-250)||(25616242-25616481)
chr7 (11-250)||(11790419-11790659)
chr7 (122-250)||(14054370-14054498)
chr7 (122-250)||(14364398-14364526)
chr7 (11-100)||(21416794-21416883)
chr7 (19-214)||(9111720-9111915)
chr7 (412-476)||(14069447-14069511)
chr7 (412-476)||(14379475-14379539)
[»] chr3 (14 HSPs)
chr3 (11-233)||(46513237-46513460)
chr3 (18-250)||(1661268-1661499)
chr3 (19-187)||(31497040-31497208)
chr3 (114-220)||(19650494-19650600)
chr3 (122-220)||(9490868-9490966)
chr3 (19-239)||(19624719-19624940)
chr3 (88-182)||(3362861-3362955)
chr3 (115-214)||(8085984-8086083)
chr3 (11-158)||(28388802-28388953)
chr3 (114-188)||(19645916-19645991)
chr3 (164-246)||(42250917-42250999)
chr3 (11-73)||(9600941-9601003)
chr3 (132-185)||(7448037-7448090)
chr3 (132-185)||(7456179-7456232)
[»] chr5 (9 HSPs)
chr5 (18-220)||(32401560-32401762)
chr5 (44-212)||(43462780-43462948)
chr5 (16-254)||(15907907-15908145)
chr5 (16-208)||(16055211-16055403)
chr5 (112-208)||(12882965-12883060)
chr5 (11-92)||(27214017-27214098)
chr5 (106-209)||(43570233-43570335)
chr5 (140-201)||(27160879-27160940)
chr5 (200-250)||(27214097-27214147)
[»] scaffold0129 (1 HSPs)
scaffold0129 (46-250)||(44550-44752)
[»] scaffold0785 (1 HSPs)
scaffold0785 (18-209)||(373-564)
[»] scaffold0578 (1 HSPs)
scaffold0578 (18-209)||(4151-4342)
[»] chr6 (5 HSPs)
chr6 (11-166)||(35241691-35241846)
chr6 (51-213)||(34182153-34182315)
chr6 (112-250)||(17518731-17518871)
chr6 (11-127)||(29618416-29618532)
chr6 (20-78)||(17518654-17518712)
[»] chr1 (7 HSPs)
chr1 (111-250)||(43542340-43542479)
chr1 (74-250)||(9438407-9438583)
chr1 (11-214)||(725979-726184)
chr1 (176-220)||(1257179-1257223)
chr1 (130-245)||(15262239-15262348)
chr1 (106-144)||(31438796-31438834)
chr1 (18-100)||(43543994-43544076)
[»] scaffold0524 (1 HSPs)
scaffold0524 (18-193)||(9688-9863)


Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 476
Target Start/End: Original strand, 35024952 - 35025419
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35024952 caaaagtcaagactgcataaatataaggtggagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 35025051  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35025052 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacataggtggaagattgttga 35025151  T
Q  211 tgagcattcagtgccaagaccaccttagaaacatctgattttgcctaacatgtattttgtaaattccaaacccttccgcatatatagctaaagcttctgt 310  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||||     
T  35025152 tgagcattcagtgccaagaccaccttagaagcatctgattttgcctaacatgtattttgtaaattccaaacccttccgc----atagttaaagcttctgc 35025247  T
Q  311 aactttaagaatcaacattatctctcaatcaatatttcataaaacataccgaaaatggccaccatatttctaacataaacatttcttatttctaacaca- 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||     
T  35025248 aactttaagaatcaacattatctctcaatcaatatttcataaaacatacagaaaatggacaccatatttctaacataaacatttcttatttctaacacac 35025347  T
Q  410 -----tccataaaacaaagccaaaatatggactataatatcctcggtagcatcagtaatatttcactccaac 476  Q
         | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  35025348 catatttcataaaacagagccaaaatatggactataatatcctcgatagcatcagtaatatttctctccaac 35025419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 5007336 - 5007527
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||  ||||| ||||  |||| |||| || | |||||||||| ||||| | || ||||| ||| ||||||||||||| ||  ||||| ||||||    
T  5007336 caagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaaattcttaaaagcatatttagctaaataatgagcagcttggttggcttca 5007435  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    || |  |||||||||||||||||||||||||||| | | || |||||||||||||||| |||||||||||| |||||| ||  |||||||||    
T  5007436 cggcgcacatgcaaaaaatttaaactacgaaaactacccttaaaactaatacaatctcaaataatagagccaacatagttgagagattgttg 5007527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 5953214 - 5953413
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtct--gg 108  Q
    |||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| ||  |||  ||| ||| ||||||||||||| ||| |  ||    
T  5953214 caaatgtcaaaactgcataaatataaggtggagtctctttgatttatatgcaatctaaactacaaaggacatatttagctaaataatgaggagtttatgg 5953313  T
Q  109 ttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgtt 208  Q
    || | |||||| |||||| ||||||||   |||  ||||||||| ||||| ||||||||| |||||||||||||| | || | |||| ||  ||||||||    
T  5953314 ttggtttcacgtctaacaagcaaaaaa---aaaaaacgaaaacagacattaaaactaatataatctccaataatataaccaatataggtgagagattgtt 5953410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 17539219 - 17539063
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    ||||||||| ||||||||||  |||| | || |||| |||||||||| | ||| | |||||| | ||| | ||||||||||| ||  ||||| ||| |||    
T  17539219 aagactgcagaaatataaggcggagttttttcgatccatatgcaatctacattcttaagagcgtatttagttaaataatgagcagcttggttggctgcac 17539120  T
Q  119 gcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctc 175  Q
    | ||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||    
T  17539119 gtctaacatgcaaaaaatttaaactacgaaaactaccattaaaactaaaacaatctc 17539063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 24310247 - 24310319
Alignment:
Q  123 aacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatag 195  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  24310247 aacatgcaaaaaatttaaactacaaaaacaaacattataactaatataatctccaataatagagccgacatag 24310319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 23497230 - 23497056
Alignment:
Q  75 aagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatct 174  Q
    |||||||| ||| ||||||||||||| ||  ||||| |||| ||| ||||||||||||||| ||||| ||||||||| | | || |||||||||||||||    
T  23497230 aagagcatatttagctaaataatgagcagcttggttggctt-acgtctaacatgcaaaaaaattaaattacgaaaactacccttaaaactaatacaatct 23497132  T
Q  175 ccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    |  ||||||||| | |||||| ||| ||||||||| ||| ||||||  || || ||||| |||||| |||| ||||    
T  23497131 catataatagagtcaacatagttgggagattgttggtgaccattcaacgctaaaaccacattagaagcatccgatt 23497056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 38115991 - 38115886
Alignment:
Q  145 cgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacat 244  Q
    |||||||||||||| ||||||||||||||| | |||||| || ||| |||| ||||||||| ||| |||||||||| || | ||||||| |||||| |||    
T  38115991 cgaaaacaaacattaaaactaatacaatcttcgataataaagtcgatataggtggaagattattggtgagcattcaatggcgagaccacgttagaagcat 38115892  T
Q  245 ctgatt 250  Q
     |||||    
T  38115891 atgatt 38115886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 26024957 - 26024799
Alignment:
Q  94 taatgagtagtctggttagcttcacgcctaacatgcaaaaaatt-taaactacgaaaacaaacattg-aaactaatacaatctccaataatagagccgac 191  Q
    |||| |||||| ||||| ||| |||||||||||| |||||||   ||||||||| |||| | | ||  ||| |||||||||||| |||||||||||| ||    
T  26024957 taatcagtagtttggttggctacacgcctaacatacaaaaaaaaataaactacggaaactatccttttaaattaatacaatctcgaataatagagccaac 26024858  T
Q  192 atagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    |||| | | ||||||||| ||||||||||  || || ||||| |||||| |||||||||    
T  26024857 atagttaggagattgttggtgagcattcaacgctaaaaccacattagaagcatctgatt 26024799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 20559493 - 20559382
Alignment:
Q  16 gtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagctt 115  Q
    |||||||||||| ||||||||||  |||| ||||  | | ||||| |||| ||||| | |||||||| ||| |||||||||| || ||  ||||| ||||    
T  20559493 gtcaagactgcagaaatataaggcggagtttcttcaacccatatgtaatctaaattcttaagagcatatttagctaaataataagaagcttggttggctt 20559394  T
Q  116 cacgcctaacat 127  Q
    ||| ||||||||    
T  20559393 cacacctaacat 20559382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 2537677 - 2537897
Alignment:
Q  29 aaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatg 128  Q
    ||||| ||||| ||||||||| |||| |||||  ||| |||||||||| | ||||||| ||||||||||||| || |||||| | |||||||||||||||    
T  2537677 aaatacaaggtggagtctcttcgatccatatgtgatctaaattatgaaaaacatgtttagctaaataatgagcagcctggttggattcacgcctaacatg 2537776  T
Q  129 caaaaaatttaaactacgaaaacaaa-cattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaa 227  Q
    |||||||||||  ||||||||| ||| | |||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  2537777 caaaaaattta--ctacgaaaaaaaaactttgaaattaacacaatctccaataatagagccgacataggtggaagatcgttgatgagcattcagcgccaa 2537874  T
Q  228 gaccaccttagaaacatctgatt 250  Q
    |||||| |||||| |||||||||    
T  2537875 gaccacattagaagcatctgatt 2537897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 19237892 - 19237728
Alignment:
Q  56 atatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaac 155  Q
    ||||||||||  |||| | |||||||| ||  ||||||||||||| ||  ||||| ||||||||||||||||||||| |||||||||||| ||||| | |    
T  19237892 atatgcaatctgaattcttaagagcatattcagctaaataatgagcagcttggttggcttcacgcctaacatgcaaacaatttaaactacaaaaactacc 19237793  T
Q  156 attgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattca 220  Q
     || |||||||||||||||| |||||||||||| |||||| ||| ||||||| | ||| ||||||    
T  19237792 tttaaaactaatacaatctcaaataatagagccaacatagttgggagattgtaggtgaacattca 19237728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 19311076 - 19310912
Alignment:
Q  56 atatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaac 155  Q
    ||||||||||  |||| | |||||||| ||  ||||||||||||| ||  ||||| ||||||||||||||||||||| |||||||||||| ||||| | |    
T  19311076 atatgcaatctgaattcttaagagcatattcagctaaataatgagcagcttggttggcttcacgcctaacatgcaaacaatttaaactacaaaaactacc 19310977  T
Q  156 attgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattca 220  Q
     || |||||||||||||||| |||||||||||| |||||| ||| ||||||| | ||| ||||||    
T  19310976 tttaaaactaatacaatctcaaataatagagccaacatagttgggagattgtaggtgaacattca 19310912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 8970419 - 8970256
Alignment:
Q  57 tatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaaca 156  Q
    ||||||||| ||||| | |||||||| ||| ||| |||||||||  || ||||| ||||||||||||||||| | |||||||||||||||||||| | |     
T  8970419 tatgcaatctaaattcttaagagcatatttagcttaataatgagatgtttggttggcttcacgcctaacatgtacaaaatttaaactacgaaaactaccc 8970320  T
Q  157 ttgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattca 220  Q
    || |||||||||||||||  || ||||||| | |||||| ||| ||||||||| ||||||||||    
T  8970319 tttaaactaatacaatcttgaagaatagagtcaacatagttgggagattgttggtgagcattca 8970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 14154437 - 14154205
Alignment:
Q  22 actgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcc 121  Q
    |||||| ||||| ||| | |||| ||||  ||| |||||||||| ||||| | ||||| || ||||||||||||||||| ||  ||||| ||||||||||    
T  14154437 actgcagaaatacaagatggagtttcttcaatccatatgcaatctaaattcttaagaggatattttgctaaataatgagcagattggttggcttcacgcc 14154338  T
Q  122 taacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcag 221  Q
    | ||||||| |||||||||||||||||||| | |||| |||||||||||||||  |||||| ||||| |||||  ||  ||||||||  ||| ||||||     
T  14154337 tgacatgca-aaaatttaaactacgaaaactaccattaaaactaatacaatcttgaataattgagccaacataattgagagattgttagtgaacattcaa 14154239  T
Q  222 tgccaagaccaccttagaaacatctgattttgcc 255  Q
     || || || || |||||| ||||||||| ||||    
T  14154238 cgctaaaactacattagaagcatctgattctgcc 14154205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 25481781 - 25481971
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    |||| |||| |||||||||| ||||| ||||  ||  |||||||||| || || | || ||||| ||| ||||||||||||| ||  ||||| |||| ||    
T  25481781 aagattgcagaaatataaggcagagtttcttcaattcatatgcaatctaatttcttaatagcatatttagctaaataatgagcagcttggttggcttgac 25481880  T
Q  119 gcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    |||||||||||| |||||||||||||| |||   | | || || ||||||||||||| |||||||||| | |||||| ||| || ||||||    
T  25481881 gcctaacatgcagaaaatttaaactacaaaagttacccttaaagctaatacaatctcgaataatagagtcaacatagttgggaggttgttg 25481971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 38312264 - 38312097
Alignment:
Q  29 aaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatg 128  Q
    ||||||||||| | |||||||  ||| |||| || || | |||||||||||  | ||  |||| |||||||| ||| |||||||  ||||| ||||||||    
T  38312264 aaatataaggtggggtctcttcaatccatatacagtcgatattatgaagagagtattgagctagataatgagcagtttggttagtctcacgtctaacatg 38312165  T
Q  129 caaaaaat-ttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatag 195  Q
    |||||||| ||||||| |||||| | ||||| ||| |||| ||||||||| ||||||| || ||||||    
T  38312164 caaaaaatcttaaactccgaaaaaagacattaaaattaatgcaatctccagtaatagatccaacatag 38312097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 9492514 - 9492602
Alignment:
Q  56 atatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaacta 144  Q
    |||||||||| ||||| | |||||||| ||| ||||||||||| | ||  ||||| |||||| |||||||||||| |||||||||||||    
T  9492514 atatgcaatctaaattcttaagagcatatttagctaaataatgtgcagcttggttggcttcatgcctaacatgcagaaaatttaaacta 9492602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 1154569 - 1154686
Alignment:
Q  69 attatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaata 168  Q
    |||||||||| ||| ||| ||||||||||||  ||| ||||  | ||||||| ||| ||||||| | ||||||||| ||||| | ||||| |||||||||    
T  1154569 attatgaagaacatatttagctaaataatgaacagtttggtcggattcacgcttaatatgcaaatagtttaaactatgaaaatatacattaaaactaata 1154668  T
Q  169 caatctccaataatagag 186  Q
    |||||   ||||||||||    
T  1154669 caatccttaataatagag 1154686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 35427851 - 35427910
Alignment:
Q  114 ttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatc 173  Q
    ||||||||||||||| |||||||| ||| || |||||  |||||||||||||||||||||    
T  35427851 ttcacgcctaacatgtaaaaaattgaaattatgaaaatgaacattgaaactaatacaatc 35427910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 38141456 - 38141587
Alignment:
Q  20 agactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacg 119  Q
    |||||||| ||||| |||| ||||| ||||  ||  ||||| |||| ||||| | |||| ||| ||||||||||||||||  ||  ||||  ||||||||    
T  38141456 agactgcagaaatacaaggcagagtttcttcaattcatatgtaatctaaattcttaagaacatattttgctaaataatgaacagattggtcggcttcacg 38141555  T
Q  120 cctaacatgcaaaaaatttaaactacgaaaac 151  Q
    ||||| || |||||||  ||||||||||||||    
T  38141556 cctaaaatacaaaaaaaataaactacgaaaac 38141587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 16435740 - 16435826
Alignment:
Q  164 taatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    |||||||||||| |||||||  | | |||||| ||| ||||||||  ||||||||||  || || ||||| ||||||||||||||||    
T  16435740 taatacaatctcgaataataaggtcaacatagttgggagattgttagtgagcattcaacgctaaaaccacattagaaacatctgatt 16435826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 9492613 - 9492686
Alignment:
Q  177 aataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    |||||||||||| |||||  ||| ||||||||||||||||||||  || || || || |||||| |||||||||    
T  9492613 aataatagagccaacataattgggagattgttgatgagcattcaacgctaaaacaacattagaagcatctgatt 9492686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 43472961 - 43473195
Alignment:
Q  16 gtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagctt 115  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||| | ||| || ||||||| ||| ||||||||||||| | | ||||| ||||    
T  43472961 gtcaagactgcagaaatataaggtagagtctcttcgatccatatgcaatctacattttgcagagcatatttagctaaataatgagaaatttggtttgctt 43473060  T
Q  116 cacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagc 215  Q
    || |||||||||||  |||||||||||  ||||| ||| | || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  43473061 catgcctaacatgccgaaaatttaaaccgcgaaagcaaccgttaaaactaatacaatctccaataatagagccgacataggtgggagattgttgatgagc 43473160  T
Q  216 attcagtgccaagaccaccttagaaacatctgatt 250  Q
    |||||  ||||  ||||| |||||| |||| ||||    
T  43473161 attcaacgccagaaccacgttagaagcatcggatt 43473195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 40756271 - 40756480
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||||| ||||| ||||  |||| ||||||||| |||||||||| ||||| | |||||||| ||||||||||||||||| ||| |||||    
T  40756271 caaatgtcaagactgcagaaatacaaggcggagtttctttgatccatatgcaatctaaattcttaagagcatattttgctaaataatgagcagtttggtt 40756370  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
      ||||||||||||||||||||||||||||||||| ||||  | | || |||||||||||||||| |||||||||||| |||||| ||| |||||||||     
T  40756371 gacttcacgcctaacatgcaaaaaatttaaactacaaaaattacccttaaaactaatacaatctcgaataatagagccaacatagttgggagattgttgg 40756470  T
Q  211 tgagcattca 220  Q
    ||||||||||    
T  40756471 tgagcattca 40756480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 11422634 - 11422849
Alignment:
Q  35 aaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaa 134  Q
    ||||| ||||||||| |||| |||||||||| |||||||||||||||||||| | ||||||||||| |   || || |||||| |||||||||| ||       
T  11422634 aaggtggagtctcttcgatccatatgcaatctaaattatgaagagcatgtttagataaataatgagcaacttgattggcttcatgcctaacatgaaattt 11422733  T
Q  135 atttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccacc 234  Q
     ||||||||||||||||||||| | || |||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||||  |||||||| ||     
T  11422734 ttttaaactacgaaaacaaacacttaagctaatacaatcttcaataatagagccgaaataggtggaagattgttgatgagtattcaacgccaagactaca 11422833  T
Q  235 ttagaaacatctgatt 250  Q
    ||||||||||||||||    
T  11422834 ttagaaacatctgatt 11422849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 17318573 - 17318801
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||| ||||| ||||  |||| |||| |||| |||||||||| ||||| | ||||||||  || ||||| ||||||  ||  ||||| ||||||    
T  17318573 caagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaaattcttaagagcataattagctaagtaatgaacagcttggttggcttca 17318672  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcat 217  Q
    |||||||||||||||||| ||| ||||||||||| | | || |||||||||||||||| |||||||||| | |||||| | | |||||| || |||| ||    
T  17318673 cgcctaacatgcaaaaaaattatactacgaaaactacccttcaaactaatacaatctcgaataatagagtcaacatagttaggagattggtggtgagtat 17318772  T
Q  218 tcagtgccaagaccaccttagaaacatct 246  Q
    |||  || || ||||| ||||||||||||    
T  17318773 tcaacgctaaaaccacattagaaacatct 17318801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 7104133 - 7103939
Alignment:
Q  56 atatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaac 155  Q
    |||||||||  ||||| | |||||||| ||| |||||||||| || ||  ||||| |||||||||||||||||||||||| ||||||||||||||| | |    
T  7104133 atatgcaatttaaattcttaagagcatatttagctaaataataagcagcttggttggcttcacgcctaacatgcaaaaaaattaaactacgaaaactacc 7104034  T
Q  156 attgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
     || | ||| |||||||||| |||||||||||| |||||| ||| || |||||| |||||||| |  || || ||||| |||||| |||||||||    
T  7104033 cttaatacttatacaatctcgaataatagagccaacatagttgggaggttgttggtgagcatttaacgctaaaaccacattagaagcatctgatt 7103939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 44527779 - 44527553
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    ||||||||| |||||||| || |||| |||| ||||||||||||||| |||||| |||||| || ||||| ||| ||||||| | | |||||   |||||    
T  44527779 aagactgcagaaatataatgtggagtttcttcgatctatatgcaatctaaattacgaagagtatattttgttaagtaatgagaaatttggttgatttcac 44527680  T
Q  119 gcctaacatgcaaaaaatt-----taaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatga 213  Q
      ||||||||||||||| |     |||||||| |||||||||||| ||||||||||| ||| |||| ||| |||  |||||| || ||||||||||||||    
T  44527679 atctaacatgcaaaaaaataataataaactacaaaaacaaacattaaaactaatacattcttcaatgataaagcatacataggtgaaagattgttgatga 44527580  T
Q  214 gcattcagtgccaagaccaccttagaa 240  Q
    ||||||| || ||| ||||| ||||||    
T  44527579 gcattcaatgtcaataccacattagaa 44527553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 50430081 - 50429940
Alignment:
Q  41 gagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaa 140  Q
    ||||||||| || | |||||||||   ||||||| ||| ||| ||| ||||||||||||| ||| |||||  ||||||||||||||||||||||||||||    
T  50430081 gagtctcttcgacccatatgcaatttgaattatgtagatcatatttagctaaataatgagcagtttggttgacttcacgcctaacatgcaaaaaatttaa 50429982  T
Q  141 actacgaaaacaaacattgaaactaatacaatctccaataatag 184  Q
    ||| ||||||||| || | |||||||||||| ||||||||||||    
T  50429981 act-cgaaaacaagcagtaaaactaatacaa-ctccaataatag 50429940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 9741878 - 9742032
Alignment:
Q  56 atatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaac 155  Q
    |||||||||| |||||||||||| ||| ||| ||||||| |||||  |   |||| |||||||| |||||||| |||||| ||||||||| ||| | |      
T  9741878 atatgcaatctaaattatgaagatcatatttagctaaatgatgagctgctcggttggcttcacgtctaacatgaaaaaaaattaaactacaaaatctaca 9741977  T
Q  156 attgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
    ||| ||||||||||||||||||||||||||||  |||||| ||| ||||||||||    
T  9741978 attaaaactaatacaatctccaataatagagcaaacataggtgggagattgttga 9742032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 24389151 - 24389057
Alignment:
Q  121 ctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagc 215  Q
    ||||||| | |||| ||||||||| || |||||||||| ||| |||||||||||||||||||||| || |||||| ||  |||||||||||||||    
T  24389151 ctaacatacgaaaattttaaactatgataacaaacattaaaattaatacaatctccaataatagatccaacataggtgtgagattgttgatgagc 24389057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 9745289 - 9745497
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||||||||||| ||||  |||| |||| |||| | |||||||| |||||||||| |  || ||| || |||||||||   | || |||    
T  9745289 caaatgtcaagactgcataaatacaaggctgagtttcttcgatccacatgcaatctaaattatgaaaaaaatatttagccaaataatgaactg-cttgtt 9745387  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
     | ||||||||||| | ||||||||  ||||| || ||||| |||||| ||||||||||||||||||||  || |||| |||||  | | ||||||||||    
T  9745388 ggtttcacgcctaataggcaaaaaaaataaacaacaaaaactaacattaaaactaatacaatctccaattttatagccaacataagtaggagattgttga 9745487  T
Q  211 tgagcattca 220  Q
     || ||||||    
T  9745488 cgaacattca 9745497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 7109414 - 7109252
Alignment:
Q  88 gctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagc 187  Q
    |||||||||| || ||  |||||  ||||||||||||||||||||||| ||||||||||||||| | | || |  || ||||| |||| |||||||||||    
T  7109414 gctaaataataagcagcttggttgacttcacgcctaacatgcaaaaaaattaaactacgaaaactacccttaatgcttatacagtctcgaataatagagc 7109315  T
Q  188 cgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    | |||||| | | || ||||||  ||||||| |  || || ||||| |||||| |||||||||    
T  7109314 caacatagttaggaggttgttggcgagcatttaacgctaaaaccacattagaagcatctgatt 7109252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 28033801 - 28033731
Alignment:
Q  148 aaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcatt 218  Q
    ||||||||||| ||||||||||||| | |||||| ||||||||||||| ||  ||||||||||||||||||    
T  28033801 aaacaaacattaaaactaatacaatattcaataagagagccgacataggtgagagattgttgatgagcatt 28033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 2059369 - 2059263
Alignment:
Q  106 tggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagatt 205  Q
    |||||||| ||||||||||||||||| ||| |||| ||| ||||| | ||||| ||| |||| ||||||||||||||||| || |||||| ||| | |||    
T  2059369 tggttagcctcacgcctaacatgcaagaaacttaacctatgaaaa-agacattaaaattaatgcaatctccaataatagatcc-acatagttgggatatt 2059272  T
Q  206 gttgatgag 214  Q
    |||||||||    
T  2059271 gttgatgag 2059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 42181572 - 42181463
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    ||||||||| ||||| || ||  ||||||||  |||||||||||||| |||||||||||||||| |||   |||||||| || ||||| ||||| ||| |    
T  42181572 aagactgcagaaatacaatgtgaagtctcttcaatctatatgcaatctaaattatgaagagcatttttaattaaataataagcagtctagttagtttcgc 42181473  T
Q  119 gcctaacatg 128  Q
    ||| ||||||    
T  42181472 gccaaacatg 42181463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 25143941 - 25143836
Alignment:
Q  109 ttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgtt 208  Q
    ||||| ||||| |||| |||||| ||  |||||||| ||||| | ||||| ||| |||| ||||||||||||||||| || |||||| ||| |  |||||    
T  25143941 ttagcctcacgtctaagatgcaagaatcttaaactatgaaaaaagacattaaaattaatgcaatctccaataatagatccaacatagttgggatgttgtt 25143842  T
Q  209 gatgag 214  Q
    ||||||    
T  25143841 gatgag 25143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 2577272 - 2577333
Alignment:
Q  121 ctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataata 183  Q
    ||||||||||||| |||||||||||||||||| ||||| ||| ||||| ||||  ||||||||    
T  2577272 ctaacatgcaaaa-atttaaactacgaaaacatacattaaaattaatataatcatcaataata 2577333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 29907676 - 29907765
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgag 100  Q
    |||| ||||||||| |||||||| ||||  |||| ||||  ||| |||||||||| ||||| | || ||||| ||| |||||||||||||    
T  29907676 caaatgtcaagactacataaatacaaggcggagtttcttcaatccatatgcaatctaaattcttaatagcatatttagctaaataatgag 29907765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 21947373 - 21947429
Alignment:
Q  164 taatacaatctccaataatagagccgacatagatggaagattgttgatgagcattca 220  Q
    ||||||||||||||||| || | |||| | |||||| |||||||||||| |||||||    
T  21947373 taatacaatctccaatagtatatccgataaagatgggagattgttgatgtgcattca 21947429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 31001796 - 31001596
Alignment:
Q  16 gtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagctt 115  Q
    |||||||||||  ||||| || || || |||||| |||  |||||||||| |||||||||||    ||||| |||||||||| |||||  || || ||||    
T  31001796 gtcaagactgcggaaatacaacgtggaatctcttcgattcatatgcaatctaaattatgaag----tgtttagctaaataattagtagcttgattggctt 31001701  T
Q  116 cacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagc 215  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||     
T  31001700 cacacctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatcttcaataattgagccgatataggtggaagattgttgatgagt 31001601  T
Q  216 attca 220  Q
    |||||    
T  31001600 attca 31001596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 25616242 - 25616481
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||||| ||||||||||  |||| ||||  |||  ||||||||| ||||| | || ||||| ||||||||||||||||| ||  |||||    
T  25616242 caaatgtcaagactgcagaaatataaggcggagtttcttcaatccgtatgcaatctaaattcttaaaagcatattttgctaaataatgagcagattggtt 25616341  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
     | |||||||||||||||| ||||||||||||||||||||| | | || ||| |||||||||||| |||||| ||||| |||||| ||| |||||||||     
T  25616342 ggattcacgcctaacatgcgaaaaatttaaactacgaaaactacccttaaaattaatacaatctcgaataattgagccaacatagttgggagattgttgg 25616441  T
Q  211 tgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    | ||||||||  || || ||||| |||||| || ||||||    
T  25616442 ttagcattcaacgctaaaaccacattagaagcaactgatt 25616481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 11790419 - 11790659
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| ||||||||| |||||||| |||| ||||| |||| |||| |||||||||| | ||| | |||| ||| ||| ||||||||||||| ||  |||||    
T  11790419 caaatgtcaagactacataaatacaaggcagagtttcttcgatccatatgcaatctagattcttaagatcatatttagctaaataatgagcagcgtggtt 11790518  T
Q  111 agcttcacgcctaacatgc-aaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
     |||||| ||||||||||| |||||| ||||||||| ||||| | | || |||||||||||||||  |||||||||||| |||||| ||  ||| |||||    
T  11790519 ggcttcatgcctaacatgcaaaaaaaattaaactacaaaaactacccttaaaactaatacaatcttgaataatagagccaacataggtgagagaatgttg 11790618  T
Q  210 atgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
     |||||||||| ||| || ||||| |||||| | |||||||    
T  11790619 gtgagcattcaatgctaaaaccacattagaagcgtctgatt 11790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 14054498 - 14054370
Alignment:
Q  122 taacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcag 221  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||| || ||||  ||| ||||||||||||| ||||||     
T  14054498 taacatgcaaaaaatttaaactacgaaaacaaacatcaaaattaatacaatctacaataatagagtcggcatacgtgggagattgttgatgaacattcaa 14054399  T
Q  222 tgccaagaccaccttagaaacatctgatt 250  Q
     ||||||||||||||| ||  ||||||||    
T  14054398 cgccaagaccaccttaaaagtatctgatt 14054370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 14364526 - 14364398
Alignment:
Q  122 taacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcag 221  Q
    ||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||| || ||||  ||| ||||||||||||| ||||||     
T  14364526 taacatgcaaaaaatttaaactacgaaaacaaacatcaaaattaatacaatctacaataatagagtcggcatacgtgggagattgttgatgaacattcaa 14364427  T
Q  222 tgccaagaccaccttagaaacatctgatt 250  Q
     ||||||||||||||| ||  ||||||||    
T  14364426 cgccaagaccaccttaaaagtatctgatt 14364398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 21416883 - 21416794
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgag 100  Q
    |||| |||||||||||| ||||| |||||  ||||| ||||||| | |||||||| ||||||||||||||||||||  ||||||||||||    
T  21416883 caaatgtcaagactgcagaaatacaaggtgaagtctttttgatccagatgcaatctaaattatgaagagcatgtttatctaaataatgag 21416794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9111720 - 9111915
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    ||||||||| ||||||||||   ||||||||  ||| || | || || | |||||||||||  | ||  ||||||||||| ||||  |||||||| ||||    
T  9111720 aagactgcaaaaatataaggcgaagtctcttcaatccatttacagtctagattatgaagagtgtattgagctaaataatgggtagcttggttagcctcac 9111819  T
Q  119 gcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgag 214  Q
    ||||||||||||| ||  ||||||||| |||| | | ||| ||| ||||  | |||||||||||||| || |||||| ||| | ||||||||||||    
T  9111820 gcctaacatgcaagaatcttaaactacaaaaaaagatattaaaattaatgaagtctccaataatagatccaacatagttgggatattgttgatgag 9111915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 14069447 - 14069511
Alignment:
Q  412 cataaaacaaagccaaaatatggactataatatcctcggtagcatcagtaatatttcactccaac 476  Q
    ||||| |||| ||||||| |||||||||||||||||||   |||||| ||||||||  |||||||    
T  14069447 cataacacaaggccaaaacatggactataatatcctcgtcggcatcaataatattttcctccaac 14069511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 14379475 - 14379539
Alignment:
Q  412 cataaaacaaagccaaaatatggactataatatcctcggtagcatcagtaatatttcactccaac 476  Q
    ||||| |||| ||||||| |||||||||||||||||||   |||||| ||||||||  |||||||    
T  14379475 cataacacaaggccaaaacatggactataatatcctcgtcggcatcaataatattttcctccaac 14379539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 46513460 - 46513237
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctcttt-gatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggt 109  Q
    |||| |||||||||||| ||||| || | | ||||||||| |||||||||||||||  ||||||||||| | | ||| ||||||||||||| ||  ||||    
T  46513460 caaatgtcaagactgcagaaatacaaagcaaagtctctttcgatctatatgcaatctgaattatgaagaacgtatttagctaaataatgagcagcttggt 46513361  T
Q  110 tagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    | |||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||  | |||||||| ||||||||||| |    
T  46513360 tggcttcacgcctaacatgcaaaaaaattaaactacgaaaataaacgttaaaactaatacaatctccaataatattgacgacataggtggaagattgtgg 46513261  T
Q  210 atgagcattcagtgccaagaccac 233  Q
    |||| ||||||  |||||| ||||    
T  46513260 atgaacattcaacgccaagtccac 46513237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 1661268 - 1661499
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    ||||||| |||||||| ||||  |||||||||||||| || |||||||  ||||||||||||||| ||| |  ||||||| || |   ||||| ||||||    
T  1661268 caagactacataaatacaaggcggagtctctttgatccatttgcaatctgaattatgaagagcatatttagtgaaataattagcaacttggttggcttca 1661367  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcat 217  Q
    || | ||||||||||||| |||||||| |||  |||||||| ||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||    
T  1661368 cgtcgaacatgcaaaaaaattaaactatgaag-caaacattaaaactaatacaatctccaataatagagcaaacataggtggaagattattgatgagcat 1661466  T
Q  218 tcagtgccaagaccaccttagaaacatctgatt 250  Q
    |||  || |||||||| |||||| |||||||||    
T  1661467 tcaacgctaagaccacattagaagcatctgatt 1661499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 31497208 - 31497040
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcac 118  Q
    ||||||||| ||| | |||||  || ||||| ||||||||||||||| |||||||||||||||||||| |||||||||| || ||  || ||||||||||    
T  31497208 aagactgcagaaacacaaggtgtagactcttcgatctatatgcaatctaaattatgaagagcatgtttagctaaataataagcagcttgattagcttcac 31497109  T
Q  119 gcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagc 187  Q
    |||||||||||||||||||||||||||||||| ||||| | || |||||||||||| ||||||||||||    
T  31497108 gcctaacatgcaaaaaatttaaactacgaaaataaacacttaagctaatacaatcttcaataatagagc 31497040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 19650494 - 19650600
Alignment:
Q  114 ttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatga 213  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||  |||||||| ||||||||    
T  19650494 ttcacgcctaacatgcaaaaaaattaaactacgaaaacaagcattgaaactaatacaatctcaaataatagagccgatatatgtggaagatagttgatga 19650593  T
Q  214 gcattca 220  Q
    |||||||    
T  19650594 gcattca 19650600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 9490868 - 9490966
Alignment:
Q  122 taacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattca 220  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||| | |||||| ||  ||||||||||||||||||||    
T  9490868 taacatgcaaaaagtttaaactacgaaaactaccattaaaactaatacaatctcgaataatagagtcaacatagctgtgagattgttgatgagcattca 9490966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 19624719 - 19624940
Alignment:
Q  19 aagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtta-gcttca 117  Q
    ||||||| | ||||| |||||  | |||||| |||| |||||||||| ||||||| ||||||||  || |||||||||| || ||  || ||  ||||||    
T  19624719 aagactgtagaaatacaaggtgaaatctcttcgatccatatgcaatctaaattataaagagcatacttagctaaataataaggagattgattttgcttca 19624818  T
Q  118 cgcctaacatgcaaaaa-atttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagca 216  Q
    | |||| |||||||||| |  ||||||| |||||||| ||||| ||||||||||||||| |||||||||||||| |||  ||||| || |||||||||||    
T  19624819 caccta-catgcaaaaataaataaactatgaaaacaagcattggaactaatacaatctcgaataatagagccgatatatgtggaaaatagttgatgagca 19624917  T
Q  217 ttcagtgccaagaccaccttaga 239  Q
    ||||   ||||||| ||||||||    
T  19624918 ttcaacaccaagactaccttaga 19624940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 3362861 - 3362955
Alignment:
Q  88 gctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataat 182  Q
    |||| |||||||| ||| |||||||| ||||| ||||||||||| ||  |||||||||||||| | ||||| ||| |||| ||||||||||||||    
T  3362861 gctagataatgagcagtttggttagcctcacgtctaacatgcaagaatcttaaactacgaaaaaatacattaaaattaatgcaatctccaataat 3362955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 8086083 - 8085984
Alignment:
Q  115 tcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgag 214  Q
    |||||||||||||| ||| || ||||||||| |||| | ||||| ||| |||| |||||| |||||||||| || |||||| ||| | ||||||||||||    
T  8086083 tcacgcctaacatgtaaataacttaaactactaaaaaagacattaaaattaatgcaatcttcaataatagatccaacatagttgggatattgttgatgag 8085984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 28388953 - 28388802
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatg---ttttgctaaataatgagtag-tct 106  Q
    |||| ||||||| ||||||||||||||  ||| | | || |||  |||||||||| |||||||||||| |||    ||| |||||||| |||| || | |    
T  28388953 caaatgtcaagattgcataaatataagacagaatattttcgattcatatgcaatctaaattatgaagatcatactatttagctaaatagtgagcagcttt 28388854  T
Q  107 ggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacatt 158  Q
    |||| ||||||||| ||||||||  ||||||||||||||||| ||| |||||    
T  28388853 ggttggcttcacgcttaacatgcttaaaatttaaactacgaagacatacatt 28388802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 19645916 - 19645991
Alignment:
Q  114 ttcacgcctaacatgcaaaaaat-ttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagcc 188  Q
    |||||| |||||||||||||||  |||| |||| ||||||| ||||| ||||||| |||||| |||||||||||||    
T  19645916 ttcacgactaacatgcaaaaaaaattaagctacaaaaacaagcattggaactaattcaatcttcaataatagagcc 19645991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 42250999 - 42250917
Alignment:
Q  164 taatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatct 246  Q
    ||||||||||  |||||||||||| ||||||| ||  ||||||||| ||| ||||||| ||||||||||| ||| || |||||    
T  42250999 taatacaatcatcaataatagagcagacataggtgagagattgttggtgaacattcagcgccaagaccacgttaaaagcatct 42250917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 9601003 - 9600941
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattat 73  Q
    |||| |||||||||| | |||||| |||| |||||||||||||| ||||||| || |||||||    
T  9601003 caaatgtcaagactgtagaaatatgaggtggagtctctttgatccatatgcagtctaaattat 9600941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 7448090 - 7448037
Alignment:
Q  132 aaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataataga 185  Q
    ||||||||||| || |||||||||||| ||| ||||| ||||||| ||||||||    
T  7448090 aaaatttaaaccacaaaaacaaacattaaaattaatataatctccgataataga 7448037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 7456232 - 7456179
Alignment:
Q  132 aaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataataga 185  Q
    ||||||||||| || |||||||||||| ||| ||||| ||||||| ||||||||    
T  7456232 aaaatttaaaccacaaaaacaaacattaaaattaatataatctccgataataga 7456179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 32401560 - 32401762
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||| ||||| ||||  |||| |||| |||| |||||||||| ||||| | |||||||| ||| ||||||||||||| ||  ||||| ||||||    
T  32401560 caagactgcagaaatacaaggcggagtttcttcgatccatatgcaatctaaattcttaagagcatatttagctaaataatgagcagcttggttggcttca 32401659  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcat 217  Q
     ||||||||||||||||||||||||||||||||| | | || ||| |||||||||||| |||||||||||| |||||| ||| ||||||||| |||||||    
T  32401660 tgcctaacatgcaaaaaatttaaactacgaaaactacccttaaaattaatacaatctcgaataatagagccaacatagttgggagattgttggtgagcat 32401759  T
Q  218 tca 220  Q
    |||    
T  32401760 tca 32401762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 43462948 - 43462780
Alignment:
Q  44 tctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaact 143  Q
    |||||||||||||| || |||| |||||||||||||||| ||| ||||||||| ||| ||  ||||| |||| |||||||||||||||||||||||||||    
T  43462948 tctctttgatctatgtgtaatctaaattatgaagagcatatttagctaaataacgagaagcatggttggctttacgcctaacatgcaaaaaatttaaact 43462849  T
Q  144 acgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatg 212  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||| |||| | | ||||||| ||||    
T  43462848 acgaaaacaaacattaaaaataatacaatctccaataatagaaccgatataggtaggagattgtcgatg 43462780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 15907907 - 15908145
Alignment:
Q  16 gtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagctt 115  Q
    |||||||||||||||||| ||| |  | ||||||  ||| | |||||||| |  ||||| ||| ||| ||| |||||||||||   ||  ||||| ||||    
T  15907907 gtcaagactgcataaatacaagttgaactctcttcaatccacatgcaatctaccttatggagaacatatttagctaaataatgttcagcttggttggctt 15908006  T
Q  116 cacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagc 215  Q
    || |||||||||||||| ||||||||||| |||| |||||||||||| ||||||||| ||||||||||||| ||||| ||  || |||||||||||||||    
T  15908007 catgcctaacatgcaaacaatttaaactatgaaagcaaacattgaaattaatacaatttccaataatagaggcgacagaggagggagattgttgatgagc 15908106  T
Q  216 attcagtgccaagaccaccttagaaacatctgattttgc 254  Q
    |||||  ||||| ||||  |||||| |||||||||||||    
T  15908107 attcaacgccaaaaccatgttagaagcatctgattttgc 15908145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 16055403 - 16055211
Alignment:
Q  16 gtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagctt 115  Q
    |||||||| ||| |||| |||| | | || |||| |||| |||| ||||| |||||| ||||| | | |||  |||||||||||| ||  ||||| ||||    
T  16055403 gtcaagacggcagaaatttaagttggggtatcttcgatccatatacaatctaaattacgaagaacgtatttaactaaataatgagcagcttggttggctt 16055304  T
Q  116 cacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgtt 208  Q
    || | ||||| ||||||| | |||||||||||||||||||||| |||  |||||||||| |||||||||||||||||||| ||| ||| ||||    
T  16055303 catgtctaacgtgcaaaatagttaaactacgaaaacaaacattaaaataaatacaatctacaataatagagccgacataggtgggagaatgtt 16055211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 12882965 - 12883060
Alignment:
Q  112 gcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgtt 208  Q
    ||||||| ||||||||||||||  ||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||| ||| ||| ||||||||    
T  12882965 gcttcacacctaacatgcaaaat-tttaaactatgaaaagaaacattaaaactaatacaatctccaataataaagccgacgtaggtgggagattgtt 12883060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 27214017 - 27214098
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaa 92  Q
    |||| ||||||||| |||||||| |||||||||||||||  ||| |||||||||| |||||||||||||||||||| |||||    
T  27214017 caaatgtcaagactacataaatacaaggtagagtctcttcaatccatatgcaatctaaattatgaagagcatgtttagctaa 27214098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 43570335 - 43570233
Alignment:
Q  106 tggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagatt 205  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||| | | || ||||  |||||||||| |||||||||| | |||||| |||||||||    
T  43570335 tggttggcttcacgtcta-catgcaaaaaatttaaactacgaaaactacccttaaaacatatacaatctcaaataatagagtcaacatagttggaagatt 43570237  T
Q  206 gttg 209  Q
    ||||    
T  43570236 gttg 43570233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 27160940 - 27160879
Alignment:
Q  140 aactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaa 201  Q
    |||||| |||||||||| | || |||||||||||| |||||||| |||||||||||||||||    
T  27160940 aactacaaaaacaaacacttaagctaatacaatcttcaataataaagccgacatagatggaa 27160879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 27214097 - 27214147
Alignment:
Q  200 aagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    ||||||||||||||| |||||  ||||||||||| |||||| |||||||||    
T  27214097 aagattgttgatgagtattcaacgccaagaccacattagaagcatctgatt 27214147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 250
Target Start/End: Original strand, 44550 - 44752
Alignment:
Q  46 tctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactac 145  Q
    |||| |||| |||||||||| ||||| | |||||||| ||| |||||||||||| || |  |||| |||||||||||||||||| ||||| |||||||||    
T  44550 tcttcgatccatatgcaatctaaattcttaagagcatatttagctaaataatgaataattgggttggcttcacgcctaacatgccaaaaaattaaactac 44649  T
Q  146 gaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatc 245  Q
    |||||| |  ||| |||||||||||||||| ||||||| | || |||||| |||||||||||| | ||||| |||   |||| ||||| |||||| ||||    
T  44650 gaaaactacaattaaaactaatacaatctcgaataatata-ccaacatagttggaagattgtttacgagca-tcaacaccaaaaccacattagaagcatc 44747  T
Q  246 tgatt 250  Q
    |||||    
T  44748 tgatt 44752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 564 - 373
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||| |||||||||| ||||| ||||  ||  |||||||||| ||||| | || ||||| ||| ||||||||||||| ||| ||||| ||||||    
T  564 caagactgcagaaatataaggcagagtttcttcaattcatatgcaatctaaattcttaatagcatatttagctaaataatgagcagtttggttggcttca 465  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    || |||||||||| |||||||||| ||||||| | | | || || ||||||||||||| |||||||||| | |||||| ||| || ||||||    
T  464 cgtctaacatgcagaaaatttaaattacgaaagctacccttaaagctaatacaatctctaataatagagtcaacatagttgggaggttgttg 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 4342 - 4151
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||  ||||| ||||  |||| |||| || | |||||||||| ||||| | || ||||| ||| ||||||||||||| ||  ||||| ||||||    
T  4342 caagactgcggaaatacaaggcggagtttcttcgacccatatgcaatctaaattcttaaaagcatatttagctaaataatgagcagcttggttggcttca 4243  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    || |  |||||||||||||||||||||||||||| | | || |||||||||||||||| |||||||||||| |||||| ||  |||||||||    
T  4242 cggcgcacatgcaaaaaatttaaactacgaaaactacccttaaaactaatacaatctcaaataatagagccaacatagttgagagattgttg 4151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 35241691 - 35241846
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||| | ||||| ||||  |||| |||| || |||||||||||| ||||| | |||| ||| ||| ||||||||||||| |||||||||    
T  35241691 caaatgtcaagactgtagaaatacaaggcggagtttcttcgacctatatgcaatctaaattcttaagaacatatttagctaaataatgagcagtctggtt 35241790  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaa 166  Q
     |||| |||||||||||| |||||||||||||||||||||| | |||| |||||||    
T  35241791 ggctttacgcctaacatgtaaaaaatttaaactacgaaaactatcattaaaactaa 35241846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 34182153 - 34182315
Alignment:
Q  51 gatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaa 150  Q
    ||||| ||||||||| |||||||||||| ||| ||| ||||||||||||| |   | ||||| |||| ||||||||||||||||| ||||||||||||||    
T  34182153 gatctgtatgcaatctaaattatgaagaacatatttagctaaataatgagcatcttagttagtttcatgcctaacatgcaaaaaaattaaactacgaaaa 34182252  T
Q  151 caaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatga 213  Q
    |||||||| ||| |||||||||||  ||| ||||| ||| ||||| ||  | |||||||||||    
T  34182253 caaacattaaaattaatacaatcttaaatgatagaaccggcataggtgacaaattgttgatga 34182315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 17518731 - 17518871
Alignment:
Q  112 gcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaact--aatacaatctccaataatagagccgacatagatggaagattgttg 209  Q
    |||||| ||||||||| ||||||||||||||||||||||| |||| | || ||  ||||||||||  ||||||||||| || |||| |||||||||||||    
T  17518731 gcttcatgcctaacatacaaaaaatttaaactacgaaaaccaacacttaagcttaaatacaatctttaataatagagctgatataggtggaagattgttg 17518830  T
Q  210 atgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    ||||| |||||  | ||||||||| |||||| ||| |||||    
T  17518831 atgagtattcaacgtcaagaccacattagaatcatttgatt 17518871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 29618416 - 29618532
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||||||||| ||||| ||||| |||| |||| |||| |||||||||| ||||| | |||||||| |||  |||||||||||  ||| |||||    
T  29618416 caaaagtcaagactgcagaaatacaaggtggagtttcttcgatccatatgcaatctaaattcttaagagcatatttaactaaataatgaacagtttggtt 29618515  T
Q  111 agcttcacgcctaacat 127  Q
     ||||||||||||||||    
T  29618516 ggcttcacgcctaacat 29618532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 17518654 - 17518712
Alignment:
Q  20 agactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaaga 78  Q
    ||||||||  |||| | ||||||||||||||||||||||||||||| ||||||||||||    
T  17518654 agactgcaggaatacagggtagagtctctttgatctatatgcaatctaaattatgaaga 17518712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 43542479 - 43542340
Alignment:
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttga 210  Q
    |||||||| |||||||||||||||||||||||||||||||| | | || |||||||||||||||  ||||||||||||  ||||| ||| |||||||||     
T  43542479 agcttcactcctaacatgcaaaaaatttaaactacgaaaactacccttcaaactaatacaatcttgaataatagagccagcatagttgggagattgttgg 43542380  T
Q  211 tgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    ||||||||||  || || ||||| |||||| |||||||||    
T  43542379 tgagcattcaacgctaaaaccacattagaagcatctgatt 43542340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 9438407 - 9438583
Alignment:
Q  74 gaagagcatgttttgctaaataatgagtagtctggttagcttcacgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatc 173  Q
    |||| |||| ||| |||||||||| || ||| ||||| |||||| ||||||||||||||||| |||| ||||  |||  |||||| ||||||||||| |     
T  9438407 gaagcgcatatttagctaaataataagcagtttggttggcttcatgcctaacatgcaaaaaaattaagctacataaattaacattaaaactaatacactt 9438506  T
Q  174 tccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaagaccaccttagaaacatctgatt 250  Q
    |  |||||||||| ||||||||  || || ||||||||||||||| |  | ||| ||||| ||||||||||||||||    
T  9438507 tataataatagagtcgacataggagggaggttgttgatgagcattaaacgtcaaaaccacattagaaacatctgatt 9438583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 725979 - 726184
Alignment:
Q  11 caaaggtcaagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggtt 110  Q
    |||| |||||| ||||| |||||||||||  ||||||||| ||| |||| |||| || |||||||||||  | ||  | ||||||||| | ||  |||||    
T  725979 caaaagtcaagtctgcagaaatataaggtgaagtctctttaatccatatacaattcagattatgaagagagtattgagttaaataatgggcagcttggtt 726078  T
Q  111 agcttcacgcctaacatgcaaaaaatttaaactacg--aaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgtt 208  Q
     |  ||||||||||||||||| ||| ||||||||||  |||| | ||||  ||| | || ||||||||||| ||||| |  |||||| | ||| ||||||    
T  726079 ggactcacgcctaacatgcaagaaagttaaactacggaaaaaaagacatgaaaatttatgcaatctccaatcatagatcatacatagtttgaatattgtt 726178  T
Q  209 gatgag 214  Q
    ||||||    
T  726179 gatgag 726184  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 1257179 - 1257223
Alignment:
Q  176 caataatagagccgacatagatggaagattgttgatgagcattca 220  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||    
T  1257179 caataatagagccgacataggtgggagattgttgatgaacattca 1257223  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 15262239 - 15262348
Alignment:
Q  130 aaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacatagatggaagattgttgatgagcattcagtgccaaga 229  Q
    |||||| |||||||||| ||| ||||||| ||||||||||||||| |      ||| || |||||| |||||| |||||||||||| || |  || ||||    
T  15262239 aaaaaaattaaactacggaaataaacattaaaactaatacaatcttc------agaaccaacataggtggaagtttgttgatgagcgtttaacgcaaaga 15262332  T
Q  230 ccaccttagaaacatc 245  Q
    |||| |||||||||||    
T  15262333 ccacattagaaacatc 15262348  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 31438834 - 31438796
Alignment:
Q  106 tggttagcttcacgcctaacatgcaaaaaatttaaacta 144  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  31438834 tggttagcctcacgcctaacatgcaaagaatttaaacta 31438796  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 43544076 - 43543994
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgag 100  Q
    ||||| |||||||||||| ||  |||| |||| |||| |||||||||| ||||| | |||||||  ||| |||||||||||||    
T  43544076 caagattgcataaatatatggcggagtttcttcgatccatatgcaatctaaattcttaagagcaaatttagctaaataatgag 43543994  T

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Target: scaffold0524 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 9688 - 9863
Alignment:
Q  18 caagactgcataaatataaggtagagtctctttgatctatatgcaatccaaattatgaagagcatgttttgctaaataatgagtagtctggttagcttca 117  Q
    |||||||||||||||| |||| | ||| ||||  ||||| |||||||| ||||| | | || ||| |||| |||||||||||| | | ||||| |||||     
T  9688 caagactgcataaatacaaggcaaagtttcttcaatctacatgcaatctaaattcttatgatcatatttttctaaataatgagcaatttggttggcttcg 9787  T
Q  118 cgcctaacatgcaaaaaatttaaactacgaaaacaaacattgaaactaatacaatctccaataatagagccgacat 193  Q
    |||||||||||| ||||||||||||||||||||| | | || |||||||||||||||  |||||| ||||| ||||    
T  9788 cgcctaacatgcgaaaaatttaaactacgaaaactacccttaaaactaatacaatcttgaataattgagccaacat 9863  T

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