View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_high_4 (Length: 393)
Name: NF14175_high_4
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 40004131 - 40004491
Alignment:
| Q |
15 |
aatataagattaagcaaagaatatacataattgagctgctaggtgccaatcttgaaaagcaagtcagaaaaacagttcatccaacatctcctctaggtcc |
114 |
Q |
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| T |
40004131 |
aatataagattaagcaaagaatatacagaattgagctgctaggtgccaatcttgaaaagcaagtcagaaaaacagttcatccaacatctcctctaggtcc |
40004230 |
T |
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| Q |
115 |
aagaactttaacagnnnnnnngaagttcatcaaacttttagtggcaccctacaaaatatgaacaaggttgaagaaagatttgctacagtcagaatgattc |
214 |
Q |
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| T |
40004231 |
aagaactttaacagaaaaaaagaagttcatcaaacttttagtggcaccctacaaaatatcaacaaggttgaagaaagatttgctacagttagaatgattc |
40004330 |
T |
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| Q |
215 |
ctttccttttctttaccatttgcagatgagcaaaggaataataaaacttagacttctaaccacaatttcacaatctacagatttttatttgagcttctcc |
314 |
Q |
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| T |
40004331 |
ctttccttttctttaccatttgcagatgagcaaaggaataataaaacttagacttctaaccacaatttcacaatctacagatttttatttgagcttctcc |
40004430 |
T |
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| Q |
315 |
tttctgcctcttttttagcaaccagaacacagaactcggaaccaagcatgtcgtgtatatc |
375 |
Q |
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| T |
40004431 |
tttctgcctctttttcagcaaccagaacacagaactcggaaccaagcatgtcgtgtatatc |
40004491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 244 - 375
Target Start/End: Complemental strand, 50242429 - 50242295
Alignment:
| Q |
244 |
gcaaaggaataataaaacttagacttctaaccacaatttcacaatctacag---atttttatttgagcttctcctttctgcctcttttttagcaaccaga |
340 |
Q |
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| T |
50242429 |
gcaaagggataataaaacttcgctttctaaccacgatttcacaatctaccgcttctttttatttgagcttctcctttctgcctctttttcggcaaccaga |
50242330 |
T |
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| Q |
341 |
acacagaactcggaaccaagcatgtcgtgtatatc |
375 |
Q |
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| T |
50242329 |
acacagaactcggaaccaagcatgtcgtgtatatc |
50242295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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