View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_high_5 (Length: 262)
Name: NF14175_high_5
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 10760553 - 10760814
Alignment:
| Q |
1 |
aaatcggaaatagagagtagagtaattctcattaaattgaactgactaaaggtaatattagaaatccgtatatatagctatctaattactgtttagtcaa |
100 |
Q |
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| T |
10760553 |
aaatcggaaatagagagtagagtaattctcattaaattgaactgactaaaggtaatattagaaatccgtatatatagctatctaattactgtttagtcaa |
10760652 |
T |
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| Q |
101 |
aaaccaaagttatcaagctctaacaaactaactgattataaattgaaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacactcaa |
200 |
Q |
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| T |
10760653 |
aaaccaaagttatcaagctctaacaaactaactgattataaattgaaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacactcaa |
10760752 |
T |
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| Q |
201 |
ttgtggttgttttaataactcagccattattataggaaatattaatcctaaacagtgaaact |
262 |
Q |
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| T |
10760753 |
ttgtggttgttttaataactcagccattattacaggaaatattaatcctaaacagtgaaact |
10760814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 10613809 - 10613682
Alignment:
| Q |
10 |
atagagagtagagtaattctcattaaattgaactgactaaaggtaatattagaaatccgtatatatagctatctaattactgtttagtcaaaaaccaaag |
109 |
Q |
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| T |
10613809 |
atagagagtagggtaattctgattacattgaactgagtaaagacaagattagaaatcagtatatatagctatctaattattgtttaatcaaaaaccaaag |
10613710 |
T |
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| Q |
110 |
ttatcaagctctaacaaactaactgattata |
140 |
Q |
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| T |
10613709 |
ttaaaa---tctaacaaactaattgattata |
10613682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 10607334 - 10607253
Alignment:
| Q |
115 |
aagctctaacaaactaactgattataaattgaaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacac |
196 |
Q |
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| T |
10607334 |
aagctctaacaaactaattgatcacaaacagaaagttaactaagttaactgaataactgaaattaagctgtaatatgcacac |
10607253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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