View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14175_low_1 (Length: 635)

Name: NF14175_low_1
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14175_low_1
NF14175_low_1
[»] chr4 (5 HSPs)
chr4 (84-619)||(53051346-53051892)
chr4 (203-274)||(14066299-14066370)
chr4 (203-276)||(1452387-1452461)
chr4 (201-271)||(748590-748661)
chr4 (47-86)||(53051278-53051317)
[»] chr7 (8 HSPs)
chr7 (202-275)||(42681338-42681411)
chr7 (203-276)||(31299700-31299773)
chr7 (203-275)||(42681195-42681267)
chr7 (203-276)||(18581948-18582022)
chr7 (203-275)||(19531553-19531626)
chr7 (203-276)||(18343911-18343985)
chr7 (203-276)||(18347440-18347514)
chr7 (203-272)||(18344818-18344888)
[»] chr5 (5 HSPs)
chr5 (203-276)||(4195747-4195820)
chr5 (203-281)||(34180895-34180973)
chr5 (201-276)||(10050873-10050949)
chr5 (203-276)||(6685889-6685963)
chr5 (207-271)||(9246609-9246674)
[»] chr3 (2 HSPs)
chr3 (203-274)||(30440644-30440715)
chr3 (201-275)||(45082746-45082821)
[»] chr8 (1 HSPs)
chr8 (201-276)||(41264116-41264191)
[»] chr1 (3 HSPs)
chr1 (201-276)||(28375690-28375765)
chr1 (211-274)||(29529081-29529144)
chr1 (201-276)||(395448-395524)
[»] chr2 (1 HSPs)
chr2 (210-274)||(17955705-17955769)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 84 - 619
Target Start/End: Original strand, 53051346 - 53051892
Alignment:
Q  84 tatgtaaaaaattacactgcaagtgtagaca----tattcaatcaaccaagttaaatccttatagtaacaaggaagttcaaatttatatatttacnnnnn 179  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||         
T  53051346 tatgtaaaaaattacactgcaagtgtagacagacatattcaatcaaccaagtaaaatccttacagtaacaaggaagttcaaatttatatatttacaaaaa 53051445  T
Q  180 nnnnnnngaa---ctcactcaaagaacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 276  Q
            ||   ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53051446 aaaaaaaaaagatctca---aaagaacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 53051542  T
Q  277 ctgttcacattttccaacatttatttaattatttctatctattaaatttgacaacagacaaaacgctgtatgaaactattgaaggtgtaacaatgttata 376  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53051543 ctgttcactttttccaacatttatttaattatttctatctattaaatttgacaacagacaaaacgctgtatgaaactattgaaggtgtaacaattttata 53051642  T
Q  377 gaaggaatattctgttacatttctgtatttttgttttgttgaataagctctgaacatggtggtgaca-------caacaggtaatgtaaggcttaatata 469  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  53051643 gaaggaatattatgttacatttctgtatttttgttttgttgaataagctctgaacatggtggtgacacaacagtcaacaggtaatgtaaggcttaatata 53051742  T
Q  470 tttgatgagtaaatttctttcattttaaaacgacacactactacagctagctagtgggatgacaatttgattgataacgatgatattatgagttaagcgc 569  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53051743 tttgatgagtgaatttctttcattctaaaaccacacactactacagctagctagtgggatgacaatttgattgataacgatgatattatgagttaagcgc 53051842  T
Q  570 aagtcatggtgaaaatccatgcatcacctcgtggtaccataattattaat 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53051843 aagtcatggtgaaaatccatgcatcacctcgtggtaccataattattaat 53051892  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 14066299 - 14066370
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 274  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14066299 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 14066370  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 1452387 - 1452461
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1452387 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 1452461  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 748661 - 748590
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagac 271  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  748661 aacgccgtctgtgggaatcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 748590  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 53051278 - 53051317
Alignment:
Q  47 gacttgtagtaacaaatgttagtcaacaatgtaatattat 86  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53051278 gacttgtagtaacaaatgttagtcaacaatgtaatattat 53051317  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 42681338 - 42681411
Alignment:
Q  202 acgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggct 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42681338 acgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggct 42681411  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 31299773 - 31299700
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 276  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31299773 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggctt 31299700  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 42681195 - 42681267
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggct 275  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42681195 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggct 42681267  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 18581948 - 18582022
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18581948 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 18582022  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 19531626 - 19531553
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 275  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19531626 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 19531553  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 18343985 - 18343911
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  18343985 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggctt 18343911  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 18347514 - 18347440
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    |||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  18347514 cgccatctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggctt 18347440  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 18344888 - 18344818
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacg 272  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  18344888 cgccgtctgtggcaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacg 18344818  T

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Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 4195747 - 4195820
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4195747 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 4195820  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 34180973 - 34180895
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggcttctgtt 281  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34180973 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggcttgtgtt 34180895  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 10050873 - 10050949
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10050873 aacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 10050949  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 6685889 - 6685963
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6685889 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 6685963  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 9246674 - 9246609
Alignment:
Q  207 gtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagac 271  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9246674 gtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 9246609  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 30440715 - 30440644
Alignment:
Q  203 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30440715 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 30440644  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 45082746 - 45082821
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 275  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  45082746 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 45082821  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 41264191 - 41264116
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 276  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41264191 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggctt 41264116  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 28375690 - 28375765
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggctt 276  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28375690 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggctt 28375765  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 29529081 - 29529144
Alignment:
Q  211 gtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29529081 gtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 29529144  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 395448 - 395524
Alignment:
Q  201 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 276  Q
    ||||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||    
T  395448 aacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggctt 395524  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 17955769 - 17955705
Alignment:
Q  210 tgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagacggc 274  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17955769 tgtggggatcaaacccacgaccacgtggttaaaagccacgcgctctaccactgagctaagtcggc 17955705  T

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