View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_low_11 (Length: 235)
Name: NF14175_low_11
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10760848 - 10761067
Alignment:
| Q |
1 |
ttgtttccatcttgtatttctacttttgcatctcttgatacaagatgtgatgtgggtcaaaaatcttcatcagtgggtcttcaatccatacaatataagt |
100 |
Q |
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| T |
10760848 |
ttgtttccatcttgtatttctacttttacatctcttgatacaagatgtgatgtgggtcaaaaatcttcatcagtgggtcttcaatccatacaatgtaagt |
10760947 |
T |
|
| Q |
101 |
aatatatgatcagtgacagagaactatcctcttgcattatttgaaacatactcatacggaccttaccttcataatttccatgtgcttgtatggctaaacc |
200 |
Q |
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| T |
10760948 |
aatatatgatcagtgacagagaactatcctcttgcattatttgaaacatactcatacggaccttaccttcataatttccatgtgcttgtatggctaaacc |
10761047 |
T |
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| Q |
201 |
attatcattctagtccacat |
220 |
Q |
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| T |
10761048 |
attatcattctagtccacat |
10761067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 9807288 - 9807339
Alignment:
| Q |
104 |
atatgatcagtgac-agagaactatcctcttgcattatttgaaacatactca |
154 |
Q |
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| T |
9807288 |
atatgatcagggactagagaactatcctcttgcattatttgaaacaaactca |
9807339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10612407 - 10612362
Alignment:
| Q |
4 |
tttccatcttgtatttctacttttgcatctcttgatacaagatgtg |
49 |
Q |
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| T |
10612407 |
tttccatcttgtatttctacttctgcatattttgacacaagatgtg |
10612362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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