View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_low_2 (Length: 508)
Name: NF14175_low_2
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 40183869 - 40183385
Alignment:
| Q |
18 |
tgaacaatcatcaccttcctaatattaataactatgagtatcgatttgtgatgttcagcttaaaatccaacatattattcatcaaatcatatgtaatcta |
117 |
Q |
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| T |
40183869 |
tgaacaatcatcaccttcctaatattaataactatgagtatcgatttgtgatgttaagcttaaaatccaacatattattcatcaaatcatatgtaatcta |
40183770 |
T |
|
| Q |
118 |
cattggtaggattataaaaacttcactataacattagcatgatgctattttacctccattttttatactaacacaataagtagctatagcaacaagatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40183769 |
cattggtaggattataaaaacttcactataacattagcatgatgctattttacccccattttttatactaacacaataagtagctatagcaacaagatat |
40183670 |
T |
|
| Q |
218 |
tgtcacgtcacatattacaaaacagtatgtaaattatttcattgactcaaacagtaaacagtgaataaacatgaattttgatcataaaga---------- |
307 |
Q |
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| T |
40183669 |
tgtcaagtcacatattacaaaacagtatataaattatttcattgactcaaacagtaaacagtgaataaacatgaattttgatcataaagaaaatgatcat |
40183570 |
T |
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| Q |
308 |
--aaatcctcaaatcaaacctttctatcaaggccaaaacgtgatgagaaaaacatgtctctaacccaaagaggagaccaagaaagcaaggcaaacaaacc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40183569 |
acaaatcctcaaatcaaacctttctatcaaggccaaaacgtgatgagaaaaacatgtctctaacccaaagaggagaccaagaaagcaaggcaaacaaacc |
40183470 |
T |
|
| Q |
406 |
agtcaagtgaccaaaaataatttgcttaggtggtttatttgccaaaattttattaacaacatgtctagcaaaaactctaccatcc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40183469 |
agtcaagtgaccaaaaataatttgcttaggtggtttatttgccaaaattttattaacaacatgtctagcaaaaactctaccatcc |
40183385 |
T |
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