View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_low_6 (Length: 371)
Name: NF14175_low_6
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 9787048 - 9786696
Alignment:
| Q |
17 |
aatattatcaccaaatctaactgcaaccgtagtaataaattaaaatcaatgatagcgagacaagtgttcaataattgtagacaatagtaccatacctcat |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9787048 |
aatattatcaccaaatctaactgcaaccgtggtaataaattaaaatcaatgatagtgagacaagtgttcaataattgtagacaatagtaccatacctcat |
9786949 |
T |
|
| Q |
117 |
ttaatacagccttcaactaccaccaataccgacagagctacatgcactacgccaacgccatcactctgctcatcttcccatcttctctaaattccaattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786948 |
ttaatacagccttcaactaccaccaataccgacagagctacatgcactacgccaacgccatcactctgctcatcttcccatcttctctaaattccaattc |
9786849 |
T |
|
| Q |
217 |
ccacctcatcnnnnnnnctatataaacccccaccctcttccactctacactcaccaatcaaacatacctagaaaaacaaagacacatttctctttacaaa |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9786848 |
ccacctcatctttttttctatataaacccccaccctcttccactctacactcaccaatcaaacaaacctagaaaaacaaagacacatttctctttacaaa |
9786749 |
T |
|
| Q |
317 |
gaaaaacaatggcaagcattaaggtagcatgtgttgttttgatgatgtccatc |
369 |
Q |
| |
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|||| | |||||||||||| ||||||||||||||| |||||||||||| |||| |
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|
| T |
9786748 |
gaaatataatggcaagcatgaaggtagcatgtgttcttttgatgatgtgcatc |
9786696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 364
Target Start/End: Original strand, 9831757 - 9831974
Alignment:
| Q |
158 |
atgcactacgccaacgccatcactctgctcatcttcccatcttctctaaattccaattcccacctcatcnnnnnnnctatataaacccccaccctcttcc |
257 |
Q |
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|||||||| || || ||||||||| |||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| | |
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| T |
9831757 |
atgcactaagcaaatgccatcactatgctcatcttcccaccttctccaaattccaaatcccacctcatctttttttctatataaacctccaccctcttac |
9831856 |
T |
|
| Q |
258 |
actctacactcaccaatcaaacatacctagaaaaacaaagacacatttctctttaca------------aagaaaaacaatggcaagcattaaggtagca |
345 |
Q |
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||| || |||||| || |||||| | ||||||||||||| |||||| |||||||| ||| |||| |||||||||||| ||||||||| |
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| T |
9831857 |
act-tatactcacaaaacaaacaaccaaagaaaaacaaagaaacatttatctttacaaaattttattttaaggaaaaaaatggcaagcatgaaggtagca |
9831955 |
T |
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| Q |
346 |
tgtgttgttttgatgatgt |
364 |
Q |
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||||||||||||||||||| |
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| T |
9831956 |
tgtgttgttttgatgatgt |
9831974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 9799359 - 9799247
Alignment:
| Q |
184 |
gctcatcttcccatcttctctaaattccaattcccacctcatcnnnnnnnctatataaacccccaccctcttccactctacactcaccaatcaaacatac |
283 |
Q |
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|||||||||| || |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |||| |||||||||||| |||||| || |
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| T |
9799359 |
gctcatcttcgcaccttctccaaattccaaatcccacctcatctttctt-ctatataaacctccaccctcttacactttacactcaccaaacaaaca-ac |
9799262 |
T |
|
| Q |
284 |
ctagaaaaacaaaga |
298 |
Q |
| |
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||||||||||||| |
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|
| T |
9799261 |
aaagaaaaacaaaga |
9799247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 9812652 - 9812603
Alignment:
| Q |
315 |
aagaaaaacaatggcaagcattaaggtagcatgtgttgttttgatgatgt |
364 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
9812652 |
aagaaaaacaatggcaaacatgaagatagcatgtgttgttttgatgatgt |
9812603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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