View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_low_7 (Length: 343)
Name: NF14175_low_7
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 36407308 - 36407633
Alignment:
| Q |
15 |
ctcgaccaaaccattcttggcttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaagaacttttttggttgataaaaggtt |
114 |
Q |
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| T |
36407308 |
ctcgaccaaaccattcttggcttcctgccaaattctcaagttggcttttagaacttacatcatcaaggacaagaagaacctttttgttggataaaaggtt |
36407407 |
T |
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| Q |
115 |
tcttaagctgtcctttccatggcttaatgtttcaattatcattccttttatgttcagatgagaaagaattttattttgtaactgttggagaccttggttc |
214 |
Q |
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| T |
36407408 |
tctcaagctgtcctttccttggcttaatgtttcaattaccattccttttatgttcagatgagaaagaattttattttgtaactgttggagatattggttt |
36407507 |
T |
|
| Q |
215 |
ctttccccagaaatctctctgacattggcaatgaagcaacttatatcaaactggcttttgannnnnnngaagagagctgtagtaagagttgttttaccta |
314 |
Q |
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| T |
36407508 |
ctttccccagagacctctctgacattagcaatgaagcaacttacatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttccta |
36407607 |
T |
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| Q |
315 |
tcccgcccataccccatatccctatg |
340 |
Q |
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| T |
36407608 |
tcccgcccataccccatatccctatg |
36407633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 229 - 340
Target Start/End: Original strand, 36398740 - 36398851
Alignment:
| Q |
229 |
ctctctgacattggcaatgaagcaacttatatcaaactggcttttgannnnnnngaagagagctgtagtaagagttgttttacctatcccgcccataccc |
328 |
Q |
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| T |
36398740 |
ctctctgacattggtaatgaagcaacttacatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttcctatcccgcccataccc |
36398839 |
T |
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| Q |
329 |
catatccctatg |
340 |
Q |
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| T |
36398840 |
catatccctatg |
36398851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 35685849 - 35685786
Alignment:
| Q |
36 |
ttccagccaaattctcaagttggcttttagaacttacatcgtcaaggacaagaagaactttttt |
99 |
Q |
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||||||| |||||||| |||||| | | |||||||| ||| ||||||||||| ||||||||||| |
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| T |
35685849 |
ttccagctaaattctctagttggatatcagaacttagatcatcaaggacaaggagaactttttt |
35685786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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