View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14175_low_8 (Length: 282)
Name: NF14175_low_8
Description: NF14175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14175_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 1343466 - 1343593
Alignment:
| Q |
20 |
tcttcctcaactactcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
119 |
Q |
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| T |
1343466 |
tcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
1343565 |
T |
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| Q |
120 |
gatgagaaatttgttaggatagacgccc |
147 |
Q |
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| T |
1343566 |
gatgagaaattcgttaggatagacgccc |
1343593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 1356121 - 1355994
Alignment:
| Q |
20 |
tcttcctcaactactcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
119 |
Q |
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| T |
1356121 |
tcttcctcaacaagtcactcctgcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
1356022 |
T |
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| Q |
120 |
gatgagaaatttgttaggatagacgccc |
147 |
Q |
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| T |
1356021 |
gatgagaaattcgttaggatagacgccc |
1355994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 1353313 - 1353403
Alignment:
| Q |
53 |
cttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaa---caaagaacgaaagtcttatgatgagaaatttgttaggata |
140 |
Q |
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| T |
1353313 |
cttaattcttgattattgtcgatttcatcacgtaaaaggccgttcaaacgtcaaagaacgaaagtcgtatgttgagaaatctgttaggata |
1353403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 1360603 - 1360691
Alignment:
| Q |
53 |
cttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttatgatgagaaatttgttaggatag |
141 |
Q |
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| T |
1360603 |
cttaattcttgattattgtctatttcatcacatacaaggccactcaaacaaggaaagaaaattgtatgatgaggaatttgttaggatag |
1360691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 1349912 - 1350035
Alignment:
| Q |
20 |
tcttcctcaactactcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
119 |
Q |
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| T |
1349912 |
tcttcctcaacaagtaagtccttcattgttgagctcaattcttgattattgtcaatttcatcacatacaaggccactccaacaaggaaagaaaattgtat |
1350011 |
T |
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| Q |
120 |
gatgagaaatttgttaggatagac |
143 |
Q |
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|||| ||||||||||||||||||| |
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| T |
1350012 |
gatgcgaaatttgttaggatagac |
1350035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 24617885 - 24618011
Alignment:
| Q |
20 |
tcttcctcaactactcactccttcaatcttaaccttaattcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttat |
119 |
Q |
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||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||| | ||||||||| |||| |||||| ||| |
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| T |
24617885 |
tcttcctcaacaagtcactcctgcaatgttaaccttaattcttgattattgtcgatttgatcacgtacaaggccactcaaacaaggaacaaaagtcgtat |
24617984 |
T |
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| Q |
120 |
gatgagaaatttgttaggatagacgcc |
146 |
Q |
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| T |
24617985 |
gatgacaaattcgtttggatagacgcc |
24618011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 43365147 - 43365080
Alignment:
| Q |
57 |
attcttgattattgtcgatttcatcacgtgaaaggacgctcaaacaaagaacgaaagtcttatgatga |
124 |
Q |
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| T |
43365147 |
attcttaattattgtcgatttcatcaagcaccaggccgctcaaacaaggaacgaaagtcctatgatga |
43365080 |
T |
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