View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_high_1 (Length: 540)
Name: NF14176_high_1
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Original strand, 28432061 - 28432555
Alignment:
| Q |
18 |
ttgccaaaaactctagtttgtgtataactcagacagacttgcacataatttcgagtttgaggacgattgaccgagtctaaaatataatggttattttcca |
117 |
Q |
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| T |
28432061 |
ttgccaaaaactctagtttgtgtataactcagacagagttgcacataa------------ggacgattgaccgagtctaaaatataatggttattttcca |
28432148 |
T |
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| Q |
118 |
taagacacgcctaagatgcacagcttagaatttttaaaaacccaaaatgcaacagatgaatgataaggctttgtagtgcataagacattaacctcagtta |
217 |
Q |
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| T |
28432149 |
taagacacgcctaagatgcacagcttagaatttttaaaaacccaaaatgcaacagatgaatgataaggctttgtagtgcataagacattaacctcagtta |
28432248 |
T |
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| Q |
218 |
caagttgcaatactcaactccataaatgcatctacaattccaacgggccccatgtactaagcaggtcaatggtgctttattgagtatcaatcccattccc |
317 |
Q |
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| T |
28432249 |
caagttgcaatactcaactccataaatgcatctacaattccaacgggccccatgtactaagcaggtcaatggtgctttattgagtatcaatcccattccc |
28432348 |
T |
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| Q |
318 |
agcataaacgaagtcacaaaacagataacatgaataaacctaacgtagttgacatgattgtaatttgtaacaatattatagcttccccttttgatcccca |
417 |
Q |
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| T |
28432349 |
agcataaacgaagtcacaaaacagataacatgaataaacctaacgtagttgacatgattgtaatttgtaacaatattatagcttccccttttgatcccca |
28432448 |
T |
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| Q |
418 |
tgtagtgatgtagatttacactgaaatgaacaatacggtaatatatgtatgattgcgattacgctaaggaggtcaatgtcttgtgcacatctagtgtgca |
517 |
Q |
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| T |
28432449 |
tgtagtgatgtagatttacactgaaatgaacaatacggtaatatatgtatgattgcgattacgctaaggaggtcaatgtcttgtgcacatctagtgtgca |
28432548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 6421687 - 6421628
Alignment:
| Q |
154 |
aaaacccaaaatgcaacagatgaatgataaggctttgtagtgcataagacattaacctca |
213 |
Q |
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||||||||||||||||||| | ||||||||| |||||||||| || | |||||||||||| |
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| T |
6421687 |
aaaacccaaaatgcaacagctaaatgataagtctttgtagtgtattaaacattaacctca |
6421628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 38220073 - 38220119
Alignment:
| Q |
149 |
ttttaaaaacccaaaatgcaacagatgaatgataaggctttgtagtg |
195 |
Q |
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| T |
38220073 |
tttttaaaacccaaaatgcatcagttgaatgataaggctctgtagtg |
38220119 |
T |
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