View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_high_10 (Length: 299)

Name: NF14176_high_10
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_high_10
NF14176_high_10
[»] chr4 (28 HSPs)
chr4 (13-298)||(48886446-48886731)
chr4 (13-299)||(48876063-48876349)
chr4 (13-298)||(48870760-48871045)
chr4 (76-210)||(45365859-45365993)
chr4 (76-197)||(7790381-7790502)
chr4 (56-197)||(7771696-7771837)
chr4 (93-199)||(7773481-7773587)
chr4 (13-195)||(48734987-48735169)
chr4 (76-201)||(45384531-45384662)
chr4 (92-194)||(7237398-7237500)
chr4 (92-199)||(7765941-7766048)
chr4 (110-199)||(7786763-7786852)
chr4 (92-196)||(48147368-48147472)
chr4 (92-196)||(48156084-48156188)
chr4 (233-284)||(48705169-48705220)
chr4 (92-201)||(48903255-48903361)
chr4 (157-199)||(7878045-7878087)
chr4 (56-143)||(7878738-7878825)
chr4 (91-201)||(48899037-48899147)
chr4 (79-199)||(37826632-37826752)
chr4 (92-196)||(48864337-48864441)
chr4 (56-143)||(7908657-7908744)
chr4 (92-143)||(45371729-45371780)
chr4 (76-143)||(48853036-48853103)
chr4 (167-201)||(50669382-50669416)
chr4 (165-218)||(43596153-43596206)
chr4 (77-138)||(49038518-49038579)
chr4 (79-139)||(49043810-49043870)
[»] chr5 (4 HSPs)
chr5 (106-192)||(179364-179450)
chr5 (93-194)||(9120067-9120168)
chr5 (84-142)||(29688485-29688543)
chr5 (79-192)||(29712083-29712196)
[»] chr3 (4 HSPs)
chr3 (76-201)||(47451539-47451664)
chr3 (156-201)||(11024216-11024261)
chr3 (94-201)||(11015148-11015249)
chr3 (92-201)||(11005583-11005686)
[»] chr8 (6 HSPs)
chr8 (75-201)||(15349180-15349306)
chr8 (109-199)||(4962191-4962281)
chr8 (109-199)||(12195623-12195713)
chr8 (109-199)||(12440051-12440141)
chr8 (92-199)||(12200641-12200748)
chr8 (92-199)||(12445069-12445176)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 48886731 - 48886446
Alignment:
Q  13 aatatcaccattttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttg 112  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  48886731 aatatcaccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttg 48886632  T
Q  113 tatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggat 212  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  48886631 tattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggat 48886532  T
Q  213 catagttataattataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacactcttt 298  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48886531 catagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttt 48886446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 48876349 - 48876063
Alignment:
Q  13 aatatcaccattttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttg 112  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  48876349 aatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttg 48876250  T
Q  113 tatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggat 212  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  48876249 tattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggat 48876150  T
Q  213 catagttataattataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacactctttt 299  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  48876149 catagttataattgtaataatcatctggcaaatgcatatcaaaaagttgcctttcagtgaaatcaaaggcaaggataacattctttt 48876063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 48871045 - 48870760
Alignment:
Q  13 aatatcaccattttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttg 112  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  48871045 aatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttg 48870946  T
Q  113 tatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaaccacagttgtgaggat 212  Q
    ||||  ||||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  48870945 tattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaatacccacaaaccacagttgttaggat 48870846  T
Q  213 catagttataattataataatcatctggcaaatgcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacactcttt 298  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48870845 catagttataattgtaataatcatctggtaaaagcatatcaaaaagttgcctttccgttaaatcaaaggcaaggataacattcttt 48870760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 45365859 - 45365993
Alignment:
Q  76 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 175  Q
    |||||| ||||| ||||||||||||||   |||||| ||||  ||||||||||||||||||||||||| || || ||||||||||||||| | ||||| |    
T  45365859 aagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaa 45365958  T
Q  176 aattccccaaatacccacaaaccacagttgtgagg 210  Q
    ||||| |||||||||||||||||||| | ||||||    
T  45365959 aattctccaaatacccacaaaccacaatcgtgagg 45365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 7790502 - 7790381
Alignment:
Q  76 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 175  Q
    ||||||| |||| || ||||||||||| | |||||||||||  ||||||||||||||||||| ||||| || || ||||||| |||| |||| |||||||    
T  7790502 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgaga 7790403  T
Q  176 aattccccaaatacccacaaac 197  Q
    ||||| ||||||||||||||||    
T  7790402 aattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 7771837 - 7771696
Alignment:
Q  56 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataat 155  Q
    |||| |||| ||||||| | ||||||| |||| || ||||| ||||| | |||||||||||  ||||||||||||||| ||| ||||| || || |||||    
T  7771837 tcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataat 7771738  T
Q  156 ccatagcccatagactgagaaattccccaaatacccacaaac 197  Q
    || |||| |||| |||||||||||| ||||||||||||||||    
T  7771737 ccttagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 7773481 - 7773587
Alignment:
Q  93 tccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 192  Q
    |||||||||| | |||||||||||  ||||||||||||||||||||||||| || |  || |||| ||||||||| ||| ||| |||| |||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  193 caaacca 199  Q
    |||||||    
T  7773581 caaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 48734987 - 48735169
Alignment:
Q  13 aatatcaccattttttgtacagcacaatggggaaaaggactcgtcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttg 112  Q
    ||||||||||||||||||||| || ||||||||||||  |||||  | | || ||||||| |  | | ||||||| || ||||||||||| |||||||||    
T  48734987 aatatcaccattttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttg 48735086  T
Q  113 tatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaa 195  Q
    ||||  ||||||  ||||||   ||||||||||| | || ||| ||||| | | | |||||||||||| ||||||||||||||    
T  48735087 tattctttcatcgtccatatcataactgtattattactaaaattcatagtcgaaaaactgagaaattctccaaatacccacaa 48735169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 45384531 - 45384662
Alignment:
Q  76 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactg------tattatcattataatccatagcccataga 169  Q
    ||||||| |||| |||||||||||||| | |||||| ||||  ||||||||||||||||||||||      || ||| || ||||| |||||| || | |    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgcatagctcaaaaa 45384630  T
Q  170 ctgagaaattccccaaatacccacaaaccaca 201  Q
    ||||||||||| ||||||||||||||||||||    
T  45384631 ctgagaaattctccaaatacccacaaaccaca 45384662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 7237398 - 7237500
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    |||||| |||| | || ||||||||  ||||||||||||||| ||| ||||| || || |||||||  ||||||||||||||||||||| ||||||||||    
T  7237398 gtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaataccc 7237497  T
Q  192 aca 194  Q
    |||    
T  7237498 aca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 7766048 - 7765941
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    ||||| ||||| | |||||||||||  ||||||||||||||||||| ||||| || | ||  |||| || |||||| |||||||||||| ||| ||||||    
T  7766048 gtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattctccagataccc 7765949  T
Q  192 acaaacca 199  Q
    ||||||||    
T  7765948 acaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 7786852 - 7786763
Alignment:
Q  110 ttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 199  Q
    |||||||  ||||||||||||||||||| ||||| || | ||  |||| || |||||| |||||||||||||||| ||||||||||||||    
T  7786852 ttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgagaaattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 48147368 - 48147472
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||| |  |||  | || ||||||| ||  ||||||||||||||  ||||||||||    
T  48147368 gtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccatacccgttagactgagaaattgtccaaataccc 48147467  T
Q  192 acaaa 196  Q
    |||||    
T  48147468 acaaa 48147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 48156084 - 48156188
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    |||||||| || | ||||||||||| |||||||||||||||||||||| | | || |    |||| | |||||||| |||||||||||| ||||||||||    
T  48156084 gtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctccaaataccc 48156183  T
Q  192 acaaa 196  Q
    |||||    
T  48156184 acaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 48705169 - 48705220
Alignment:
Q  233 tcatctggcaaatgcatatcaaaaagttgcctttccgttaaatcaaaggcaa 284  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  48705169 tcatctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggcaa 48705220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 48903361 - 48903255
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    ||||||||| | | |||||||||||  ||||||||||||||||||| | |||||||    ||||||| ||||||||| || |||||||| ||||||||||    
T  48903361 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  192 acaaaccaca 201  Q
    | ||| ||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 7878087 - 7878045
Alignment:
Q  157 catagcccatagactgagaaattccccaaatacccacaaacca 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  7878087 catagcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 7878825 - 7878738
Alignment:
Q  56 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 143  Q
    |||| |||| ||||||| | ||||||| |||| ||  ||||||| || | |||||||||||  |||||||||||||||||||||||||    
T  7878825 tcaggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtat 7878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 48899147 - 48899037
Alignment:
Q  91 tgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacc 190  Q
    ||||||||| || || ||||| ||||  ||||||||||||||||||||||||| || |  |||||    |||||||| ||||| ||| || ||||| |||    
T  48899147 tgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacc 48899048  T
Q  191 cacaaaccaca 201  Q
    |||||||||||    
T  48899047 cacaaaccaca 48899037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 37826632 - 37826752
Alignment:
Q  79 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaat 178  Q
    |||| |||| || ||||||||||| | || ||||||||  |||||||||| || || || ||||| || || |    |||| ||||||||||| ||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  179 tccccaaatacccacaaacca 199  Q
    || ||||||||||||||||||    
T  37826732 tctccaaatacccacaaacca 37826752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 48864441 - 48864337
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    ||||||||||| | |||||||||||  ||||||||||||||||||||  || ||||||    | || ||| ||||||||||| ||| || ||||| ||||    
T  48864441 gtccaagacgaatgcactttgtattctttcatcacccatatttcaacgatagtatcatatccacccctagaccatagactgataaactctccaaagaccc 48864342  T
Q  192 acaaa 196  Q
    |||||    
T  48864341 acaaa 48864337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 7908744 - 7908657
Alignment:
Q  56 tcagaaatgtcatcaacggtaagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 143  Q
    |||| |||| ||||||| | ||||||| |||| ||  ||||||| || | |||||||||||  ||||||||||||||||||| |||||    
T  7908744 tcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaagtgtat 7908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 45371729 - 45371780
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 143  Q
    ||||||||||| | |||||||||||  ||||| |||||||||||||||||||    
T  45371729 gtccaagacgaatgcactttgtattctttcataacccatatttcaactgtat 45371780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 48853103 - 48853036
Alignment:
Q  76 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtat 143  Q
    ||||||| |||| || |||||||||||   |||||||||||  ||||| |||||||||||||||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtat 48853036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 50669416 - 50669382
Alignment:
Q  167 agactgagaaattccccaaatacccacaaaccaca 201  Q
    |||||||||||||| ||||||||||||||||||||    
T  50669416 agactgagaaattctccaaatacccacaaaccaca 50669382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 43596153 - 43596206
Alignment:
Q  165 atagactgagaaattccccaaatacccacaaaccacagttgtgaggatcatagt 218  Q
    ||||||| |||||||||||||||||||||| | |||| || | |||||||||||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagt 43596206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  77 agaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaac 138  Q
    |||||| |||| || ||||||||||| |  ||||||||||  ||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 49043810 - 49043870
Alignment:
Q  79 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaact 139  Q
    |||| |||| || ||||| ||||| | |||||||||||  |||||||||||||||||||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 179450 - 179364
Alignment:
Q  106 cactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 192  Q
    |||||||||||  ||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||  |||||||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 9120168 - 9120067
Alignment:
Q  93 tccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccca 192  Q
    ||||||| || | |||||||||||  ||||||||||||||||||||||||| || |  | ||||||||||||||| |||||||||||| |||||||||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  193 ca 194  Q
    ||    
T  9120068 ca 9120067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 29688543 - 29688485
Alignment:
Q  84 gagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgta 142  Q
    |||| |||||||||||||| | ||| |||||||| ||||||||||||||||||||||||    
T  29688543 gagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgta 29688485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 29712083 - 29712196
Alignment:
Q  79 aacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaat 178  Q
    |||| |||| || |||||||| ||  |||| |||||||| | ||||||||||||||||||||||  || || ||   ||||| |||||||||||||| ||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccattatcatgtgccatatcccatagactgagacat 29712182  T
Q  179 tccccaaataccca 192  Q
     | | |||||||||    
T  29712183 cctctaaataccca 29712196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 47451539 - 47451664
Alignment:
Q  76 aagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgaga 175  Q
    ||||||| |||| |||  ||||||||| || ||||||||||  ||||||||||||||||||||| ||| || || | |||||| | ||| |||||| |||    
T  47451539 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaaga 47451638  T
Q  176 aattccccaaatacccacaaaccaca 201  Q
    ||||| ||||||||||||||||||||    
T  47451639 aattctccaaatacccacaaaccaca 47451664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 11024216 - 11024261
Alignment:
Q  156 ccatagcccatagactgagaaattccccaaatacccacaaaccaca 201  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  11024216 ccatagcccatagactgagaaattctccaaatatccacaaatcaca 11024261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 11015148 - 11015249
Alignment:
Q  94 ccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccac 193  Q
    ||||||||| | |||||||||||  ||||| |||||||||||||||||   ||| |      |||||||||||||||| |||||||| ||||||| ||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatcct------ccatagcccatagacttagaaattctccaaatatccac 11015241  T
Q  194 aaaccaca 201  Q
    ||| ||||    
T  11015242 aaatcaca 11015249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 11005583 - 11005686
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    ||||||||||| | |||||||||||  ||||| ||||||||||||| ||| | |||        |||||||||||||||| |||||||| ||||||| ||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccatagcccatagactaagaaattctccaaatatcc 11005676  T
Q  192 acaaaccaca 201  Q
    ||||| ||||    
T  11005677 acaaatcaca 11005686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 15349306 - 15349180
Alignment:
Q  75 taagaacatgagtatttgtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgag 174  Q
    |||||||| || | ||||||||||| ||||||||||||||||  |||||||||||||||||||   ||| || |  ||||||| ||| ||| ||||| |     
T  15349306 taagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaa 15349207  T
Q  175 aaattccccaaatacccacaaaccaca 201  Q
    |||||| ||||| ||||||||||||||    
T  15349206 aaattcgccaaagacccacaaaccaca 15349180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  109 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 199  Q
    ||||||||  ||||||||||||||||||||| ||  ||    |||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 12195713 - 12195623
Alignment:
Q  109 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 199  Q
    ||||||||  |||||| ||||||||||||||||   || || | ||| ||||  |||||||||||||||||  ||||||||||||||||||    
T  12195713 tttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaacca 12195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 12440141 - 12440051
Alignment:
Q  109 tttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaatacccacaaacca 199  Q
    ||||||||  |||||| ||||||||||||||||   || || | ||| ||||  |||||||||||||||||  ||||||||||||||||||    
T  12440141 tttgtattctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaacca 12440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 12200748 - 12200641
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    |||||||||||   || ||||||| | |||||| ||||||||||||  || | || || | ||| ||||  ||||||||| |||||||| ||||||||||    
T  12200748 gtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaataccc 12200649  T
Q  192 acaaacca 199  Q
    ||||||||    
T  12200648 acaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 12445176 - 12445069
Alignment:
Q  92 gtccaagacgagttcactttgtatttgttcatcacccatatttcaactgtattatcattataatccatagcccatagactgagaaattccccaaataccc 191  Q
    |||||||||||   || ||||||| | |||||| ||||||||||||  || | || || | ||| ||||  ||||||||| |||||||| ||||||||||    
T  12445176 gtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaataccc 12445077  T
Q  192 acaaacca 199  Q
    ||||||||    
T  12445076 acaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University