View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_high_12 (Length: 278)
Name: NF14176_high_12
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 40509464 - 40509227
Alignment:
| Q |
10 |
tatcatttagttatatgtttgataattagacatattttttgtaatatgacttgttatatgatttcagccattgtttttatgttgcacttctctcttaatt |
109 |
Q |
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| T |
40509464 |
tatcatttagttatatgtttgataattaaacatattttttgtaatatgacttgttatatgatttcagccattgtttttatgttgcacttctctcttaatt |
40509365 |
T |
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| Q |
110 |
ttttcatgtgccggtgaagtcaaattgtgtaacagcaatagtattaattcaagtagttgttgctgcttcatatgcttgatggtgatattgattggtaggt |
209 |
Q |
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| T |
40509364 |
ttttcatgtgccggtgaagtcaaattgtgtaacagcaatagtattaattcaagtagttgttgctgcttcatatgcttgatggtgatattgattggtaggt |
40509265 |
T |
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| Q |
210 |
cttcctacaatcttatactatactttatgggtaaatgg |
247 |
Q |
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| T |
40509264 |
cttcctacaatcttatactatactttatgggtaaatgg |
40509227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 40514705 - 40514635
Alignment:
| Q |
124 |
tgaagtcaaattgtgtaacagcaatagtattaattca---agtagttgttgctgcttcatatgcttgatgg |
191 |
Q |
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| T |
40514705 |
tgaagtgaaattatgtaacagcaataatattaattcaattagtagttgttgctgctcaatatgtttgatgg |
40514635 |
T |
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