View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_high_17 (Length: 227)

Name: NF14176_high_17
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_high_17
NF14176_high_17
[»] chr6 (5 HSPs)
chr6 (19-164)||(6717098-6717243)
chr6 (78-129)||(6717207-6717258)
chr6 (21-62)||(6717043-6717084)
chr6 (164-208)||(6717578-6717622)
chr6 (95-127)||(6717067-6717099)
[»] scaffold0252 (3 HSPs)
scaffold0252 (23-164)||(23980-24123)
scaffold0252 (78-129)||(24087-24138)
scaffold0252 (21-62)||(23938-23979)
[»] chr8 (11 HSPs)
chr8 (19-164)||(27064463-27064607)
chr8 (19-164)||(23098408-23098552)
chr8 (78-164)||(23098516-23098602)
chr8 (78-129)||(23098566-23098617)
chr8 (78-129)||(27064448-27064499)
chr8 (165-211)||(27064081-27064127)
chr8 (21-62)||(23098353-23098394)
chr8 (165-208)||(23098937-23098980)
chr8 (165-211)||(18289330-18289377)
chr8 (95-127)||(23098377-23098409)
chr8 (95-127)||(27064606-27064638)
[»] chr4 (4 HSPs)
chr4 (23-164)||(34337435-34337579)
chr4 (78-129)||(34337543-34337594)
chr4 (166-208)||(34337916-34337958)
chr4 (21-62)||(34337393-34337434)
[»] scaffold0521 (1 HSPs)
scaffold0521 (165-211)||(3544-3590)
[»] chr3 (1 HSPs)
chr3 (165-211)||(18203953-18203999)
[»] chr1 (1 HSPs)
chr1 (165-210)||(37905195-37905240)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 6717098 - 6717243
Alignment:
Q  19 ggggtttgtttttgatcggtttgtttttgagagtagctgaatcannnnnnnnnaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||| ||||||||||||||||||    
T  6717098 ggggtttgtttttgatcggtttgtttttgagagtagctaaatcatttttttttaatggtttgttgtgaaattgaaattgattgtagctgaatcatttgtt 6717197  T
Q  119 tttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6717198 tttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 6717243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 6717207 - 6717258
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggtt 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6717207 ttgttgtgaaattgaaattgagagtagctgaatcatttgtttttgatcggtt 6717258  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 6717043 - 6717084
Alignment:
Q  21 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6717043 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 6717084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 6717578 - 6717622
Alignment:
Q  164 tatatatacatgacaaaaatctgactttcgttttttataggtcct 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  6717578 tatatatacatgacaaaaatttgactttcgttttttataggtcct 6717622  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 6717067 - 6717099
Alignment:
Q  95 ttgatagtagctgaatcatttgtttttgatcgg 127  Q
    |||| ||||||||||||||||||||||||||||    
T  6717067 ttgagagtagctgaatcatttgtttttgatcgg 6717099  T

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Target: scaffold0252 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 23980 - 24123
Alignment:
Q  23 tttgtttttgatcgg--tttgtttttgagagtagctgaatcannnnnnnnnaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtttt 120  Q
    |||||||||||||||  |||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23980 tttgtttttgatcggggtttgtttttgagagtagctgaatcatttttttttaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtttt 24079  T
Q  121 tgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24080 tgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 24123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 24087 - 24138
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggtt 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24087 ttgttgtgaaattgaaattgagagtagctgaatcatttgtttttgatcggtt 24138  T

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Target: scaffold0252; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 23938 - 23979
Alignment:
Q  21 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 62  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  23938 ggtttgttttttatcggtttgtttttgagagtagctaaatca 23979  T

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Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 27064607 - 27064463
Alignment:
Q  19 ggggtttgtttttgatcggtttgtttttgagagtagctgaatcannnnnnnnnaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtt 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||    
T  27064607 ggggtttgtttttgatcggtttgttttttagagtagctgaatcatttttttt-aatagtttgttgtgaaattgaaattgatagtagctgaatcatttgtt 27064509  T
Q  119 tttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  27064508 tttgatctgttgttgtgaaattgaaattgagagtagctgaatcatt 27064463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 23098408 - 23098552
Alignment:
Q  19 ggggtttgtttttgatcggtttgtttttgagagtagctgaatcannnnnnnnnaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtt 118  Q
    |||||||||  ||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  23098408 ggggtttgtcattgatcggtttgttttttagagtagctgaatcatttttttt-aatggtttgttgtgaaattgaaattgatagtagctgaatcatttgtt 23098506  T
Q  119 tttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  23098507 tttgatctgttgttgtgaaattgaaattgatagtagctgaatcatt 23098552  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 23098516 - 23098602
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  23098516 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatctgttgttgtgaaattcaaattgagagtagctgaatcatt 23098602  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 23098566 - 23098617
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggtt 129  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  23098566 ttgttgtgaaattcaaattgagagtagctgaatcatttgtttttgatcggtt 23098617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 27064499 - 27064448
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggtt 129  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  27064499 ttgttgtgaaattgaaattgagagtagctgaatcatttttttttgatcggtt 27064448  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 27064127 - 27064081
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgttttttataggtcctttg 211  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  27064127 atatatacatgacaaaaatttgactttcgttttttataggtcctttg 27064081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 23098353 - 23098394
Alignment:
Q  21 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23098353 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 23098394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 23098937 - 23098980
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgttttttataggtcct 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  23098937 atatatacatgacaaaaatttgactttcgttttttataggtcct 23098980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 18289377 - 18289330
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgtt-ttttataggtcctttg 211  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||||    
T  18289377 atatatacatgacaaaaatttcactttcgtttttttataggtcctttg 18289330  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 23098377 - 23098409
Alignment:
Q  95 ttgatagtagctgaatcatttgtttttgatcgg 127  Q
    |||| ||||||||||||||||||||||||||||    
T  23098377 ttgagagtagctgaatcatttgtttttgatcgg 23098409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 27064638 - 27064606
Alignment:
Q  95 ttgatagtagctgaatcatttgtttttgatcgg 127  Q
    |||| ||||||||||||||||||||||||||||    
T  27064638 ttgagagtagctgaatcatttgtttttgatcgg 27064606  T

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Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 34337435 - 34337579
Alignment:
Q  23 tttgtttttgatcgg--tttgtttttgagagtagctgaatc-annnnnnnnnaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgttt 119  Q
    |||||||||||||||  |||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34337435 tttgtttttgatcggggtttgtttttgagagtagctgaatctatttttttttaatggtttgttgtgaaattgaaattgatagtagctgaatcatttgttt 34337534  T
Q  120 ttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34337535 ttgatcggttgttgtgaaattgaaattgagagtagctgaatcatt 34337579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 34337543 - 34337594
Alignment:
Q  78 ttgttgtgaaattgaaattgatagtagctgaatcatttgtttttgatcggtt 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34337543 ttgttgtgaaattgaaattgagagtagctgaatcatttgtttttgattggtt 34337594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 34337916 - 34337958
Alignment:
Q  166 tatatacatgacaaaaatctgactttcgttttttataggtcct 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  34337916 tatatacatgacaaaaatttgactttcgttttttataggtcct 34337958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 34337393 - 34337434
Alignment:
Q  21 ggtttgtttttgatcggtttgtttttgagagtagctgaatca 62  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  34337393 ggtttgtttttgatcggtttgtttttgagagtagctaaatca 34337434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 3590 - 3544
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgttttttataggtcctttg 211  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||    
T  3590 atatatacatgacaaaaatttcactttcgttttttatacgtcctttg 3544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 18203953 - 18203999
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgttttttataggtcctttg 211  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  18203953 atatatacatgacaaaaatttcacttttgttttttataggtcctttg 18203999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 37905240 - 37905195
Alignment:
Q  165 atatatacatgacaaaaatctgactttcgttttttataggtccttt 210  Q
    ||||||||||||||| ||| | ||||| ||||||||||||||||||    
T  37905240 atatatacatgacaataatttcacttttgttttttataggtccttt 37905195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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