View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_high_2 (Length: 478)
Name: NF14176_high_2
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 9232580 - 9233047
Alignment:
| Q |
1 |
acatatttttagaagcataatggtaagcatcttgtttgtttttggtaaataaatttaaactttacttctgtagtaaaataacatattttttgtgtgtgtg |
100 |
Q |
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| T |
9232580 |
acatatttttagaagcataatggtaagcatcttgtttgtttttggtaaataaatttaaactttactattgtagtaaaataacactttttttttttgtgtg |
9232679 |
T |
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| Q |
101 |
acgatcattagcaaaataacttgagaattagtaggtttgcaaataatattgaatgatatgcttataaaacaattaatgaataataaaaatgagtgattat |
200 |
Q |
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| T |
9232680 |
acgatcattagcaaaataagttgagaattagtaggtttgcaaataatattgaatgatatgcttataaaacaattaatgaataataaaaatgagtgattat |
9232779 |
T |
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| Q |
201 |
acttcatttaaattatataatacacgtat-------------caaaataattaatattgttttgtgcagggataaataaacaaaaggnnnnnnncattga |
287 |
Q |
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| T |
9232780 |
acttcatttaaattatacaatacacgtataaaaatttactcaaaaaataattaatattgttttgtgcagggataaataaacaaaaggaaaaaaacattga |
9232879 |
T |
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| Q |
288 |
caactagacatattgatatgtcttttaattcatgtcaatgacacgatcagtctggctgaaaaaagattcttacaggtgatcagaccataccacaggggtc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9232880 |
caactagacatattgatatgtcttttaattcatgtcaatgacacgatcagtctggctgaaaaaagattcttacaggtgatcagaccatacca-------c |
9232972 |
T |
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| Q |
388 |
agaccacaatacacatgtacatttctactactattcatcactttatgcatctatatataccaccctcactttgat |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9232973 |
agaccacaatacacatgtacatttctactactattcatcactttatgcatctatatataccaccctcactttgat |
9233047 |
T |
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