View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_high_3 (Length: 468)

Name: NF14176_high_3
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_high_3
NF14176_high_3
[»] chr7 (9 HSPs)
chr7 (20-463)||(38312994-38313437)
chr7 (141-374)||(38271548-38271782)
chr7 (141-374)||(38280223-38280456)
chr7 (232-374)||(38275391-38275533)
chr7 (234-375)||(38303254-38303395)
chr7 (20-90)||(38280122-38280191)
chr7 (20-85)||(38271445-38271510)
chr7 (23-86)||(38275199-38275262)
chr7 (78-118)||(38308982-38309022)
[»] chr1 (1 HSPs)
chr1 (249-367)||(31700990-31701108)
[»] chr8 (1 HSPs)
chr8 (306-358)||(16238514-16238565)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 38312994 - 38313437
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38312994 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaa 38313093  T
Q  120 tatacaaacagaacacaaaagttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataa 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313094 tatacaaacagaacacaaaagttagatatcaaaatcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataa 38313193  T
Q  219 aggcaaagacgagaagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313194 aggcaaagacgagaagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaa 38313293  T
Q  319 gctgaacacaaccacagtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattattatattga 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38313294 gctgaacacaaccacagtagtcaatatgacagcttctagaattactttccctgcattcagtttcaaagatcatcagaaaacatagcaattatta-attga 38313392  T
Q  419 aaaaccatgtttatcacaagccaacttaatcaattctctgctcct 463  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  38313393 aaaaccatgtttatcacaagccaacttaatcaattctcttctcct 38313437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 374
Target Start/End: Original strand, 38271548 - 38271782
Alignment:
Q  141 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 239  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| ||||||| |||| |||| |  |||||||  | ||||||||    
T  38271548 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaaataccagaatcagagcaaagagaataagaacca 38271647  T
Q  240 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagt 339  Q
    |||||||| | ||||||||| || | ||| |||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  || ||||    
T  38271648 acaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaactgcaatagt 38271747  T
Q  340 caatatgacagcttctagaattactttccctgcat 374  Q
      |||| |||| | |||||||| ||||||||||||    
T  38271748 tgatataacagatactagaattgctttccctgcat 38271782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 374
Target Start/End: Original strand, 38280223 - 38280456
Alignment:
Q  141 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 239  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| |||||||| |||||||| |   ||||||  | ||||| ||    
T  38280223 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaat-acctgaatcagaccaaagagcacaagaatca 38280321  T
Q  240 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagt 339  Q
    |||| | | |  ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  38280322 acaatgatccgtacaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagt 38280421  T
Q  340 caatatgacagcttctagaattactttccctgcat 374  Q
      |||| |||| | ||||||| |||||||||||||    
T  38280422 tgatataacagatactagaatgactttccctgcat 38280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 232 - 374
Target Start/End: Original strand, 38275391 - 38275533
Alignment:
Q  232 aagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc 331  Q
    |||||||||||||||  | ||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||     
T  38275391 aagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaact 38275490  T
Q  332 acagtagtcaatatgacagcttctagaattactttccctgcat 374  Q
     |||||||  |||| |||| | |||||||  ||||||||||||    
T  38275491 gcagtagttgatataacagatactagaatggctttccctgcat 38275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 375
Target Start/End: Original strand, 38303254 - 38303395
Alignment:
Q  234 gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac 333  Q
    |||| ||||||||| ||| |||||||||  | |||||||| ||||||| || ||||||||| |||||| | |||||||||||||| || |||||||||||    
T  38303254 gaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacacaaccac 38303353  T
Q  334 agtagtcaatatgacagcttctagaattactttccctgcatt 375  Q
    | |||| |||||||||||||||| ||||||||| ||| ||||    
T  38303354 attagttaatatgacagcttctaaaattacttttcctacatt 38303395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 38280122 - 38280191
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaa 90  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  38280122 gtagccagaaaatataatagctccaagacacccatagat-atatgtgacaacttatccaatggaaacagaa 38280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38271445 - 38271510
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaa 85  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||    
T  38271445 gtagccataaaatataatagctccaagacacccatagatcaaatgtgacaacttatccaatggaaa 38271510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 38275199 - 38275262
Alignment:
Q  23 gccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaac 86  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||||    
T  38275199 gccataaaatataatagctacaagacacccatagatcacatgtgacaacttatccaatggaaac 38275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 38308982 - 38309022
Alignment:
Q  78 aatggaaacagaatctgcaagaaaaggatcacactgttaaa 118  Q
    |||||||||| ||||||||| |||| |||||||||||||||    
T  38308982 aatggaaacaaaatctgcaacaaaatgatcacactgttaaa 38309022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 31701108 - 31700990
Alignment:
Q  249 caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga 347  Q
    |||||||||| ||||| |  ||| | |||||||  |||||  |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| |    
T  31701108 caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa 31701010  T
Q  348 cagcttctagaattactttc 367  Q
    ||||||| ||||||||||||    
T  31701009 cagcttccagaattactttc 31700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
Q  306 tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga 358  Q
    |||||||| |||||||||||||||||| | |||||||||| | ||||||||||    
T  16238514 tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga 16238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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