View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_high_6 (Length: 381)
Name: NF14176_high_6
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 22963168 - 22962801
Alignment:
| Q |
1 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtttcattatgattaacaagaaaatccagaagctcaagaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22963168 |
gaatttgagtagatgttagcttaagatttccactagtattcttccaaacatcacaaatagtttcattatgattaacaagaaaatccagaagctcgagaaa |
22963069 |
T |
|
| Q |
101 |
attacctttattacttgatgatgaattctcattatgaccacaaaaagctaaaccttgcatcaacagatatcgaatgcaatcaagtatggcagtcaggcga |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22963068 |
attacctttattatttgatgatgaattctcatcatgaccagaaaaagctaaaccttgcatcaacagatatcgaatgcaatcaagtatggcagtaaggcga |
22962969 |
T |
|
| Q |
201 |
attcgatattccactttaacttgatggg-ttgtttgtacatagctccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22962968 |
attcgatattccactttaacttgatgggattgtttgtacatagctccttcaatatgttgcttttgtttcattagattttgacagtttctccatgcttgat |
22962869 |
T |
|
| Q |
300 |
tatgagcgctgtttacacttccgacatggacttggaacttgtcaccttttctccaatttgtataacct |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |
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|
| T |
22962868 |
tatgagcgctgtttacacttccgacatggacttggaacctgtcactttttctccaatttgtaaaacct |
22962801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 22971411 - 22971045
Alignment:
| Q |
1 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtttcattatgattaacaagaaaatccagaagctcaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
22971411 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtt-cattatgattaacaagaaaatctagaagctcaagaaa |
22971313 |
T |
|
| Q |
101 |
attacctttattacttgatgatgaattctcattatgaccacaaaaagctaaaccttgcatcaacagatatcgaatgcaatcaagtatggcagtcaggcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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|
| T |
22971312 |
attacctttattacttgatgatgaattctcatcatgaccacgaaaagctaaaccttgcatcaacagatattgaatgtaatcaagtatggaagtcaggcga |
22971213 |
T |
|
| Q |
201 |
attcgatattccactttaacttgatg-ggttgtttgtacatagctccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgat |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22971212 |
attctatattccactttaacttgatgagattatttgtacatagctccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgat |
22971113 |
T |
|
| Q |
300 |
tatgagcgctgtttacacttccgacatggacttggaacttgtcaccttttctccaatttgtataacct |
367 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||| |
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|
| T |
22971112 |
tatgagcgttgtttacacttctgacatggacttggaacctgtcactttttctccaatttgtaaaacct |
22971045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 21879214 - 21879580
Alignment:
| Q |
1 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtttcattatgattaacaagaaaatccagaagctcaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
21879214 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtt-cattatgattaacaagaaaatctagaagctcaagaaa |
21879312 |
T |
|
| Q |
101 |
attacctttattacttgatgatgaattctcattatgaccacaaaaagctaaaccttgcatcaacagatatcgaatgcaatcaagtatggcagtcaggcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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|
| T |
21879313 |
attacctttattacttgatgatgaattctcatcatgaccacgaaaagctaaaccttgcatcaacagatattgaatgtaatcaagtatggaagtcaggcga |
21879412 |
T |
|
| Q |
201 |
attcgatattccactttaacttgatg-ggttgtttgtacatagctccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgat |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21879413 |
attctatattccactttaacttgatgagattatttgtacatagctccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgat |
21879512 |
T |
|
| Q |
300 |
tatgagcgctgtttacacttccgacatggacttggaacttgtcaccttttctccaatttgtataacct |
367 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||| |
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|
| T |
21879513 |
tatgagcgttgtttacacttctgacatggacttggaacctgtcactttttctccaatttgtaaaacct |
21879580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 22328297 - 22328577
Alignment:
| Q |
1 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtttcattatgattaacaagaaaatccagaagctcaagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| ||| || ||||| |
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|
| T |
22328297 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacctcaggaatagtttcattatggttaacaagaaaatccacaagttctagaaa |
22328396 |
T |
|
| Q |
101 |
attacctttattacttgatgatgaattctcattatgaccacaaaaagctaaaccttgcatcaacagatatcgaatgcaatcaagtatggcagtcaggcga |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| ||| || ||||| |||| ||||||||||| ||||||| || |
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|
| T |
22328397 |
attacctttattacttgatgatgaagtctcattatgaccacgaaaagttaaaccttgcttcagcaaatatcaaatgaaatcaagtatgatagtcaggaga |
22328496 |
T |
|
| Q |
201 |
attcgatattccactttaacttgatggg-ttgtttgtacatagctccttcaatatgttgcttttgtttcattagatcttga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22328497 |
attcgatattccactttaacttgatgggattatttgcacatagctctttcaatatgttgcttttgttttattagatcttga |
22328577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31078512 - 31078595
Alignment:
| Q |
1 |
gaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacgaatagtttcattatgattaacaagaaaat |
84 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
31078512 |
gaatttgaggagatgttagctcaagattttcacgagtattcttccaaacttcacgagtagtttcattatggttaacaagaaaat |
31078595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 31078587 - 31078651
Alignment:
| Q |
94 |
caagaaaattacctttattacttgatgatgaattctcattatgaccacaaaaagctaaaccttgc |
158 |
Q |
| |
|
||||||||||||| |||||||||||| ||| | |||||| ||||| || |||||||||||||||| |
|
|
| T |
31078587 |
caagaaaattaccattattacttgataatggagtctcatcatgactacgaaaagctaaaccttgc |
31078651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 49602003 - 49602126
Alignment:
| Q |
244 |
tccttcaatatgttgcttttgtttcattagatcttgacagtttctccatgcttgattatgagcgctgtttacacttccgacatggacttggaacttgtca |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49602003 |
tccttcaatatgttgcttttgtttcattagatcttgacagtttctcaatgcttgattatgagcgctgtttacacttccgacatggacttggaacttgtca |
49602102 |
T |
|
| Q |
344 |
ccttttctccaatttgtataacct |
367 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
49602103 |
ctttttctccaatttgtaaaacct |
49602126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 26353290 - 26353155
Alignment:
| Q |
169 |
atcgaatgcaatcaagtatggcagtcaggcgaattcgatattccactttaacttgatggg-ttgtttgtacatagctccttcaatatgttgcttttgttt |
267 |
Q |
| |
|
||||||||||||||| |||| | | ||| ||||| ||||||| | ||| ||||| ||| |||||| ||||||| |||||||||||||||||||||| |
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|
| T |
26353290 |
atcgaatgcaatcaactatgaaaattaggtgaatttgatattcatccttatcttgaagggattgtttacacatagcaacttcaatatgttgcttttgttt |
26353191 |
T |
|
| Q |
268 |
cattagatcttgacagtttctccatgcttgattatg |
303 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||| |
|
|
| T |
26353190 |
cattagagttttactgtttcaccatgcttgattatg |
26353155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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