View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_high_7 (Length: 377)

Name: NF14176_high_7
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_high_7
NF14176_high_7
[»] chr7 (9 HSPs)
chr7 (20-362)||(38312994-38313337)
chr7 (141-330)||(38271548-38271738)
chr7 (141-360)||(38280223-38280442)
chr7 (232-360)||(38275391-38275519)
chr7 (234-362)||(38303254-38303382)
chr7 (20-90)||(38280122-38280191)
chr7 (20-85)||(38271445-38271510)
chr7 (23-86)||(38275199-38275262)
chr7 (78-118)||(38308982-38309022)
[»] chr1 (1 HSPs)
chr1 (249-362)||(31700995-31701108)
[»] chr8 (1 HSPs)
chr8 (306-358)||(16238514-16238565)


Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 38312994 - 38313337
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38312994 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaatctgcaagaaaaggatcacactgttaaaa 38313093  T
Q  120 tatacaaacagaacacaaaagttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataa 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313094 tatacaaacagaacacaaaagttagatatcaaaatcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataa 38313193  T
Q  219 aggcaaagacgagaagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38313194 aggcaaagacgagaagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaa 38313293  T
Q  319 gctgaacacaaccacagtagtcaatatgacagcttctagaatta 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38313294 gctgaacacaaccacagtagtcaatatgacagcttctagaatta 38313337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 141 - 330
Target Start/End: Original strand, 38271548 - 38271738
Alignment:
Q  141 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 239  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| ||||||| |||| |||| |  |||||||  | ||||||||    
T  38271548 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaaataccagaatcagagcaaagagaataagaacca 38271647  T
Q  240 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaac 330  Q
    |||||||| | ||||||||| || | ||| |||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  38271648 acaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaagctgaacacaac 38271738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 141 - 360
Target Start/End: Original strand, 38280223 - 38280442
Alignment:
Q  141 ttagatatcaaa-tcactattacaagggctaatttgccaatttattaagaactaactagtgagcaaattacctgaataaaggcaaagacgagaagaacca 239  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||    |||| ||| |||||||| |||||||| |   ||||||  | ||||| ||    
T  38280223 ttagatatcaaaatcactattataagggctaatttgccaattaattacactctaaatagagagcaaat-acctgaatcagaccaaagagcacaagaatca 38280321  T
Q  240 acaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccacagtagt 339  Q
    |||| | | |  ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  38280322 acaatgatccgtacaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagt 38280421  T
Q  340 caatatgacagcttctagaat 360  Q
      |||| |||| | |||||||    
T  38280422 tgatataacagatactagaat 38280442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 360
Target Start/End: Original strand, 38275391 - 38275519
Alignment:
Q  232 aagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc 331  Q
    |||||||||||||||  | ||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||     
T  38275391 aagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaagctgaacgcaact 38275490  T
Q  332 acagtagtcaatatgacagcttctagaat 360  Q
     |||||||  |||| |||| | |||||||    
T  38275491 gcagtagttgatataacagatactagaat 38275519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 234 - 362
Target Start/End: Original strand, 38303254 - 38303382
Alignment:
Q  234 gaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaaccac 333  Q
    |||| ||||||||| ||| |||||||||  | |||||||| ||||||| || ||||||||| |||||| | |||||||||||||| || |||||||||||    
T  38303254 gaactaacaaagctccaatcaagaatggagctaaaaagctgaaatcataacatctttttgcagcccaagacgtgtagagagtcaaactcaacacaaccac 38303353  T
Q  334 agtagtcaatatgacagcttctagaatta 362  Q
    | |||| |||||||||||||||| |||||    
T  38303354 attagttaatatgacagcttctaaaatta 38303382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 38280122 - 38280191
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaacagaa 90  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  38280122 gtagccagaaaatataatagctccaagacacccatagat-atatgtgacaacttatccaatggaaacagaa 38280191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38271445 - 38271510
Alignment:
Q  20 gtagccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaa 85  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||    
T  38271445 gtagccataaaatataatagctccaagacacccatagatcaaatgtgacaacttatccaatggaaa 38271510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 38275199 - 38275262
Alignment:
Q  23 gccagaaaatataatagctgcaagacacccatagatcatatgtgacaactttcccaatggaaac 86  Q
    |||| |||||||||||||| |||||||||||||||||| ||||||||||||  |||||||||||    
T  38275199 gccataaaatataatagctacaagacacccatagatcacatgtgacaacttatccaatggaaac 38275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 38308982 - 38309022
Alignment:
Q  78 aatggaaacagaatctgcaagaaaaggatcacactgttaaa 118  Q
    |||||||||| ||||||||| |||| |||||||||||||||    
T  38308982 aatggaaacaaaatctgcaacaaaatgatcacactgttaaa 38309022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 362
Target Start/End: Complemental strand, 31701108 - 31700995
Alignment:
Q  249 caaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtca-agctgaacacaaccacagtagtcaatatga 347  Q
    |||||||||| ||||| |  ||| | |||||||  |||||  |||| |||||||||||||||||||||| |||| | ||| ||||||| ||||||||| |    
T  31701108 caaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtgtagagagtcagagct-atcaccaccacagcagtcaatataa 31701010  T
Q  348 cagcttctagaatta 362  Q
    ||||||| |||||||    
T  31701009 cagcttccagaatta 31700995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 16238514 - 16238565
Alignment:
Q  306 tgtagagagtcaagctgaacacaaccacagtagtcaatatgacagcttctaga 358  Q
    |||||||| |||||||||||||||||| | |||||||||| | ||||||||||    
T  16238514 tgtagagaatcaagctgaacacaacca-aatagtcaatataatagcttctaga 16238565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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