View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_low_10 (Length: 310)
Name: NF14176_low_10
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 29007574 - 29007293
Alignment:
| Q |
21 |
acacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctc |
120 |
Q |
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| T |
29007574 |
acacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctc |
29007475 |
T |
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| Q |
121 |
cacctagttctccaccacgccctcattctcctcctagtccaccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccaga |
220 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007474 |
cacctagttctgcaccacgccctcattctcctcctagtccaccgaatggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccaga |
29007375 |
T |
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| Q |
221 |
tgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgtttgggtgttccattgattacactcgtaatcatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007374 |
tgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgtttgggtgttccattgattacactcgtaatcatc |
29007293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 21465429 - 21465563
Alignment:
| Q |
29 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagt |
128 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatt |
21465528 |
T |
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| Q |
129 |
tctccaccacgccctcattctcctcctagtccacc |
163 |
Q |
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| T |
21465529 |
tctccaccatgccctcattctcctcctagtccacc |
21465563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 21409647 - 21409776
Alignment:
| Q |
23 |
acgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctcca |
122 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
21409647 |
acgctacttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaaca-----------cctcca |
21409735 |
T |
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| Q |
123 |
cctagttctccaccacgccctcattctcctcctagtccacc |
163 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21409736 |
cctatttctccaccatgccctcattctcctcctagtccacc |
21409776 |
T |
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