View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_low_16 (Length: 259)

Name: NF14176_low_16
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_low_16
NF14176_low_16
[»] chr4 (10 HSPs)
chr4 (1-240)||(48875834-48876073)
chr4 (25-231)||(48870539-48870745)
chr4 (25-231)||(48886225-48886431)
chr4 (111-231)||(48735352-48735466)
chr4 (183-231)||(48898701-48898749)
chr4 (186-231)||(48147756-48147801)
chr4 (7-57)||(48705231-48705281)
chr4 (186-231)||(48156460-48156505)
chr4 (186-231)||(48170601-48170646)
chr4 (111-164)||(48705329-48705382)
[»] chr3 (2 HSPs)
chr3 (188-233)||(11015557-11015602)
chr3 (108-152)||(11005890-11005934)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48876073 - 48875834
Alignment:
Q  1 aacactcttttgtaaatcatcaccataagccaaccaatgaatagccccgtgatagagggaacctacaccgcacttctcatcaaaggcattactaaaaggg 100  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876073 aacattcttttgtaaatcatcacgataagccaaccaatgaatagccccgtgatagagggaacctacaccgcacttctcatcaaaggcattactaaaaggg 48875974  T
Q  101 gagtgaggacactcaatttgtatccaggtattggctctcaatgagaaaaactcaaagcgtgatgccatataaggggagaatgataaaaccaccaagtaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48875973 gagtgaggacactcaatttgtatccaggtattggctctcaatgagaaaaactcgaagcgtgatgccatataaggggagaatgataaaaccaccaagtaat 48875874  T
Q  201 catctgctaattgatcatacccaaaaccatacatcttttc 240  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  48875873 catctgctaactgatcatacccaaaaccatacatcttttc 48875834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 48870745 - 48870539
Alignment:
Q  25 ataagccaaccaatgaatagccccgtgatagagggaacctacaccgcacttctcatcaaaggcattactaaaaggggagtgaggacactcaatttgtatc 124  Q
    |||||||||||||||||||||||| | ||||||||||||||| | |  ||| ||||||| | ||||   |||||||  || || ||||||||||||||||    
T  48870745 ataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcgcaaaagggctgtcagtacactcaatttgtatc 48870646  T
Q  125 caggtattggctctcaatgagaaaaactcaaagcgtgatgccatataaggggagaatgataaaaccaccaagtaatcatctgctaattgatcatacccaa 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||  ||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  48870645 caggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatcatctgttaactgatcatacccaa 48870546  T
Q  225 aaccata 231  Q
    |||||||    
T  48870545 aaccata 48870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 48886431 - 48886225
Alignment:
Q  25 ataagccaaccaatgaatagccccgtgatagagggaacctacaccgcacttctcatcaaaggcattactaaaaggggagtgaggacactcaatttgtatc 124  Q
    |||||||||||||||||||||||| | ||||||||||||||| | |  ||| ||||||| | ||||   |||||||  || || ||||||||||||||||    
T  48886431 ataagccaaccaatgaatagccccattatagagggaacctacgctgggcttatcatcaatgccattcgcaaaagggctgtcagtacactcaatttgtatc 48886332  T
Q  125 caggtattggctctcaatgagaaaaactcaaagcgtgatgccatataaggggagaatgataaaaccaccaagtaatcatctgctaattgatcatacccaa 224  Q
    ||||||||||||||||||||||||||||| ||| ||||||  ||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  48886331 caggtattggctctcaatgagaaaaactcgaagtgtgatgaaatataagggaagaatgataaaaccactaagtaatcatctgttaactgatcatacccaa 48886232  T
Q  225 aaccata 231  Q
    |||||||    
T  48886231 aaccata 48886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 48735352 - 48735466
Alignment:
Q  111 actcaatttgtatccaggtattggctctcaatgagaaaaactcaaagcgtgatgccatataaggggagaatgataaaaccaccaagtaatcatctgctaa 210  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||| || |||    ||    ||||| ||   ||||||||||||||||||||| |||    
T  48735352 actcaatttctttccaggtattagctctcaatgagaaaaactcaaagtgtaatg---gatggacggagattg---aaaccaccaagtaatcatctgttaa 48735445  T
Q  211 ttgatcatacccaaaaccata 231  Q
     || |||||||||||||||||    
T  48735446 atggtcatacccaaaaccata 48735466  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 48898749 - 48898701
Alignment:
Q  183 ataaaaccaccaagtaatcatctgctaattgatcatacccaaaaccata 231  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  48898749 ataaaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 48147756 - 48147801
Alignment:
Q  186 aaaccaccaagtaatcatctgctaattgatcatacccaaaaccata 231  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||    
T  48147756 aaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 48705231 - 48705281
Alignment:
Q  7 cttttgtaaatcatcaccataagccaaccaatgaatagccccgtgatagag 57  Q
    |||| ||||||||| || |||||||||||||||||||||||| | ||||||    
T  48705231 ctttcgtaaatcatgacgataagccaaccaatgaatagccccattatagag 48705281  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 48156460 - 48156505
Alignment:
Q  186 aaaccaccaagtaatcatctgctaattgatcatacccaaaaccata 231  Q
    |||| |||||||||||||||  |||||||||||||||||| |||||    
T  48156460 aaactaccaagtaatcatctcttaattgatcatacccaaatccata 48156505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 48170601 - 48170646
Alignment:
Q  186 aaaccaccaagtaatcatctgctaattgatcatacccaaaaccata 231  Q
    ||||||| ||||||||||||  ||| ||||||||||||||||||||    
T  48170601 aaaccactaagtaatcatctcttaactgatcatacccaaaaccata 48170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 48705329 - 48705382
Alignment:
Q  111 actcaatttgtatccaggtattggctctcaatgagaaaaactcaaagcgtgatg 164  Q
    ||||||||| | |||| |||||  ||||||||||||||||||||||| ||||||    
T  48705329 actcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgatg 48705382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 11015557 - 11015602
Alignment:
Q  188 accaccaagtaatcatctgctaattgatcatacccaaaaccataca 233  Q
    ||||||||||||||||||  ||| || |||||||||||||||||||    
T  11015557 accaccaagtaatcatctcttaaatggtcatacccaaaaccataca 11015602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 11005890 - 11005934
Alignment:
Q  108 gacactcaatttgtatccaggtattggctctcaatgagaaaaact 152  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||    
T  11005890 gacactcaatttctttccatgtattcgctctcaatgagaaaaact 11005934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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