View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14176_low_4 (Length: 462)

Name: NF14176_low_4
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14176_low_4
NF14176_low_4
[»] chr4 (25 HSPs)
chr4 (119-306)||(24537761-24537950)
chr4 (370-450)||(24538014-24538094)
chr4 (370-450)||(38433952-38434032)
chr4 (370-445)||(37371135-37371210)
chr4 (253-306)||(37371013-37371066)
chr4 (380-445)||(45635041-45635104)
chr4 (255-304)||(38433836-38433885)
chr4 (370-433)||(55344029-55344092)
chr4 (261-298)||(55344167-55344204)
chr4 (370-403)||(1821181-1821214)
chr4 (257-289)||(8077799-8077831)
chr4 (155-243)||(54297216-54297303)
chr4 (372-403)||(6949506-6949537)
chr4 (370-401)||(17330896-17330927)
chr4 (252-298)||(49299312-49299358)
chr4 (370-403)||(9808095-9808128)
chr4 (370-403)||(24073445-24073478)
chr4 (250-279)||(33889492-33889521)
chr4 (370-403)||(37209656-37209689)
chr4 (370-403)||(41503037-41503070)
chr4 (370-399)||(46430513-46430542)
chr4 (370-403)||(47944067-47944100)
chr4 (370-403)||(50721411-50721444)
chr4 (250-298)||(9088735-9088783)
chr4 (371-403)||(19443154-19443186)
[»] chr7 (35 HSPs)
chr7 (370-445)||(4962661-4962736)
chr7 (370-447)||(24393807-24393884)
chr7 (371-445)||(4678815-4678889)
chr7 (370-445)||(39434384-39434459)
chr7 (370-447)||(25290905-25290982)
chr7 (370-443)||(46671746-46671819)
chr7 (370-442)||(14771141-14771213)
chr7 (370-442)||(15221593-15221665)
chr7 (370-446)||(15643588-15643664)
chr7 (252-302)||(4962542-4962592)
chr7 (252-306)||(14771021-14771076)
chr7 (252-306)||(15221473-15221528)
chr7 (252-306)||(25291047-25291102)
chr7 (250-306)||(39429916-39429972)
chr7 (252-306)||(39434525-39434580)
chr7 (252-298)||(46671624-46671671)
chr7 (256-306)||(4678958-4679008)
chr7 (261-306)||(15643729-15643774)
chr7 (253-306)||(33258994-33259047)
chr7 (249-290)||(43369138-43369179)
chr7 (152-243)||(254902-254992)
chr7 (252-294)||(24393688-24393730)
chr7 (370-403)||(3835362-3835395)
chr7 (370-403)||(4567860-4567893)
chr7 (370-403)||(27723760-27723793)
chr7 (370-403)||(37124656-37124689)
chr7 (255-306)||(17270185-17270236)
chr7 (370-405)||(39430041-39430076)
chr7 (372-403)||(47541931-47541962)
chr7 (252-306)||(16197426-16197480)
chr7 (252-298)||(27723862-27723908)
chr7 (411-445)||(39430365-39430399)
chr7 (402-447)||(2271494-2271538)
chr7 (402-447)||(28226735-28226779)
chr7 (375-403)||(16197328-16197356)
[»] chr2 (28 HSPs)
chr2 (370-450)||(12412893-12412973)
chr2 (370-450)||(12424953-12425033)
chr2 (370-439)||(25965361-25965430)
chr2 (370-447)||(4959089-4959166)
chr2 (370-447)||(34424488-34424565)
chr2 (370-445)||(27746920-27746995)
chr2 (373-432)||(7485809-7485868)
chr2 (253-306)||(34424369-34424422)
chr2 (256-306)||(12413040-12413090)
chr2 (256-306)||(12425100-12425150)
chr2 (253-298)||(27747067-27747112)
chr2 (253-298)||(33660709-33660754)
chr2 (252-298)||(4958969-4959015)
chr2 (370-403)||(1397961-1397994)
chr2 (370-403)||(16806135-16806168)
chr2 (370-403)||(16845416-16845449)
chr2 (376-440)||(5710075-5710139)
chr2 (370-401)||(45271948-45271979)
chr2 (252-298)||(7485686-7485732)
chr2 (252-306)||(20170904-20170958)
chr2 (370-403)||(11084373-11084406)
chr2 (253-298)||(15508038-15508083)
chr2 (370-403)||(21253057-21253090)
chr2 (370-403)||(25713922-25713955)
chr2 (370-403)||(41541648-41541681)
chr2 (252-285)||(42758136-42758169)
chr2 (257-306)||(42871899-42871948)
chr2 (402-447)||(44898601-44898645)
[»] chr5 (23 HSPs)
chr5 (372-447)||(16365999-16366074)
chr5 (370-445)||(20202119-20202194)
chr5 (370-447)||(36059662-36059739)
chr5 (370-447)||(17558251-17558328)
chr5 (372-447)||(32717715-32717789)
chr5 (370-424)||(14655282-14655335)
chr5 (256-306)||(32717599-32717649)
chr5 (252-306)||(17558393-17558447)
chr5 (252-298)||(20202268-20202314)
chr5 (257-306)||(16366142-16366191)
chr5 (263-306)||(36059554-36059597)
chr5 (370-403)||(6428561-6428594)
chr5 (370-400)||(1584179-1584209)
chr5 (373-403)||(32474648-32474678)
chr5 (252-298)||(39585344-39585390)
chr5 (250-280)||(43346823-43346853)
chr5 (250-279)||(249710-249739)
chr5 (261-306)||(11825179-11825224)
chr5 (250-306)||(14655409-14655466)
chr5 (250-279)||(16365647-16365676)
chr5 (370-403)||(17201989-17202022)
chr5 (252-293)||(28620633-28620674)
chr5 (371-403)||(19804236-19804268)
[»] chr3 (22 HSPs)
chr3 (370-447)||(13779101-13779178)
chr3 (371-445)||(25841574-25841648)
chr3 (374-443)||(7259416-7259484)
chr3 (370-450)||(21959434-21959514)
chr3 (252-298)||(7259291-7259337)
chr3 (258-306)||(297025-297073)
chr3 (401-447)||(6749361-6749406)
chr3 (252-298)||(16236982-16237028)
chr3 (256-306)||(34824271-34824321)
chr3 (370-403)||(38750566-38750599)
chr3 (370-403)||(45647070-45647103)
chr3 (254-290)||(19578967-19579003)
chr3 (370-401)||(21916039-21916070)
chr3 (372-403)||(21934016-21934047)
chr3 (255-306)||(21959317-21959368)
chr3 (402-447)||(1405300-1405343)
chr3 (252-298)||(2599641-2599687)
chr3 (401-447)||(6472393-6472438)
chr3 (373-403)||(37030484-37030514)
chr3 (252-281)||(38750447-38750476)
chr3 (370-403)||(45667911-45667944)
chr3 (253-297)||(27818023-27818067)
[»] chr1 (21 HSPs)
chr1 (370-447)||(11237705-11237782)
chr1 (370-445)||(23697528-23697603)
chr1 (371-447)||(1674364-1674440)
chr1 (370-434)||(31622889-31622953)
chr1 (380-445)||(2656149-2656212)
chr1 (252-306)||(11237586-11237640)
chr1 (252-297)||(1674244-1674289)
chr1 (370-413)||(786691-786734)
chr1 (253-306)||(31622770-31622823)
chr1 (370-403)||(32769469-32769502)
chr1 (370-403)||(41117464-41117497)
chr1 (266-306)||(4395534-4395574)
chr1 (256-306)||(1394931-1394981)
chr1 (252-306)||(19270252-19270306)
chr1 (252-298)||(23697413-23697459)
chr1 (252-298)||(36319432-36319478)
chr1 (252-298)||(52415735-52415781)
chr1 (370-403)||(11795574-11795607)
chr1 (370-403)||(13254258-13254291)
chr1 (370-403)||(36319551-36319584)
chr1 (370-403)||(52415627-52415660)
[»] scaffold0006 (3 HSPs)
scaffold0006 (370-453)||(46027-46110)
scaffold0006 (398-453)||(46337-46392)
scaffold0006 (252-297)||(45908-45953)
[»] chr8 (15 HSPs)
chr8 (370-445)||(9455518-9455593)
chr8 (370-447)||(3443431-3443508)
chr8 (370-445)||(2742651-2742726)
chr8 (252-306)||(34039455-34039509)
chr8 (260-306)||(3443318-3443364)
chr8 (255-298)||(7577822-7577865)
chr8 (252-298)||(9455666-9455712)
chr8 (370-401)||(1256347-1256378)
chr8 (372-403)||(3742211-3742242)
chr8 (196-243)||(27167457-27167504)
chr8 (252-294)||(2742541-2742583)
chr8 (411-445)||(7577950-7577984)
chr8 (370-403)||(7695005-7695038)
chr8 (370-403)||(34146747-34146780)
chr8 (370-403)||(38402014-38402047)
[»] chr6 (12 HSPs)
chr6 (370-447)||(7972369-7972446)
chr6 (370-446)||(21527031-21527107)
chr6 (251-298)||(6026622-6026669)
chr6 (252-306)||(21526911-21526965)
chr6 (252-306)||(7972249-7972303)
chr6 (370-403)||(2437336-2437369)
chr6 (250-289)||(17752210-17752249)
chr6 (370-403)||(8049834-8049867)
chr6 (370-403)||(14093321-14093354)
chr6 (370-399)||(25057045-25057074)
chr6 (252-281)||(26252000-26252029)
chr6 (370-403)||(26252119-26252152)
[»] scaffold1130 (2 HSPs)
scaffold1130 (377-453)||(657-733)
scaffold1130 (252-297)||(815-860)
[»] scaffold0005 (3 HSPs)
scaffold0005 (370-436)||(271973-272039)
scaffold0005 (250-298)||(271845-271893)
scaffold0005 (370-403)||(257262-257295)
[»] scaffold0097 (1 HSPs)
scaffold0097 (370-447)||(48596-48672)
[»] scaffold1327 (1 HSPs)
scaffold1327 (370-403)||(1251-1284)
[»] scaffold0188 (1 HSPs)
scaffold0188 (401-446)||(5754-5798)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 24537761 - 24537950
Alignment:
Q  119 ttgttctgttaagtttatttttatattatgttcatctatatctatatacaaaggagatgtatgattttgggttgtcttttttatcttacaattataccct 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24537761 ttgttctgttaagtttatttttatattaggttcatctatatctatatataaaggagatgtatgatttttggttgtcttttttatcttacaattataccct 24537860  T
Q  219 ttatataaattattctaattacaatctac--aactctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  24537861 ttatataaattattctaattacaatctactatactctctgttcctttttaagtgtcgttttagaattttaacataaaaatagcgaagtgt 24537950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 24538014 - 24538094
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24538014 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 24538094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 38433952 - 38434032
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||    
T  38433952 cacacactttatctttccaataaatttaatatgtaacaaacaattgtgagttactactctatttctctaacaaattccgat 38434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 37371135 - 37371210
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  37371135 cacacactttatcttttcaataaatttaatatacaacaaacaattgttagttactactctctttttccaacaaatt 37371210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 37371013 - 37371066
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37371013 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 37371066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 45635041 - 45635104
Alignment:
Q  380 atctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  45635041 atctttcaaataaatttaatatg--acaaacaattgttagttactactctctttttccaacaaatt 45635104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 38433836 - 38433885
Alignment:
Q  255 cgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagt 304  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  38433836 cgttcctttttaagtgtcgttttaaaattttaacacaaaaatagcgaagt 38433885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 55344092 - 55344029
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctcttt 433  Q
    |||||||||||||| || |||||||||||||||||| | ||||||||||| |||||||| ||||    
T  55344092 cacacactttatctgtctaataaatttaatatgtaatagacaattgttaggtactactcacttt 55344029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 55344204 - 55344167
Alignment:
Q  261 tttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55344204 tttttaagtgtcgttttagaattttaacacaaaaatag 55344167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 1821181 - 1821214
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  1821181 cacacactttatctttccaataaatttaatatgt 1821214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 8077799 - 8077831
Alignment:
Q  257 ttcctttttaagtgtcgttttagaattttaaca 289  Q
    |||||||||||||||||||||||||||||||||    
T  8077799 ttcctttttaagtgtcgttttagaattttaaca 8077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 54297216 - 54297303
Alignment:
Q  155 tatatctatatacaaaggagatgtatgattttgggttgtcttttttatcttacaattataccctttatataaattattctaattacaat 243  Q
    |||| ||||||||||||| |||| |||||||| ||||   |||||||| || |||||||||||||||| |||| ||||| |||| ||||    
T  54297216 tatacctatatacaaaggggatgcatgattttaggttag-ttttttatatttcaattataccctttatttaaactattcaaattgcaat 54297303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 403
Target Start/End: Complemental strand, 6949537 - 6949506
Alignment:
Q  372 cacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||    
T  6949537 cacactttatctttccaataaatttaatatgt 6949506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Complemental strand, 17330927 - 17330896
Alignment:
Q  370 cacacactttatctttccaataaatttaatat 401  Q
    ||||||||||||||||||||||||||||||||    
T  17330927 cacacactttatctttccaataaatttaatat 17330896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 49299312 - 49299358
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||| ||||||||||||||| ||||||||  |||||||||||||||    
T  49299312 ctccgctcctttttaagtgtctttttagaaaattaacacaaaaatag 49299358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 9808128 - 9808095
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||| ||||||||||||||||    
T  9808128 cacacactttatctttctaataaatttaatatgt 9808095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 24073445 - 24073478
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  24073445 cacacactttatcttttcaataaatttaatatgt 24073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 279
Target Start/End: Original strand, 33889492 - 33889521
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttag 279  Q
    ||||||||||||||||||||||||||||||    
T  33889492 ctctccgttcctttttaagtgtcgttttag 33889521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 37209656 - 37209689
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  37209656 cacacactttatcttttcaataaatttaatatgt 37209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 41503070 - 41503037
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||| ||||||||||||||||    
T  41503070 cacacactttatctttctaataaatttaatatgt 41503037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Original strand, 46430513 - 46430542
Alignment:
Q  370 cacacactttatctttccaataaatttaat 399  Q
    ||||||||||||||||||||||||||||||    
T  46430513 cacacactttatctttccaataaatttaat 46430542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 47944067 - 47944100
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||| ||||||||||||||||    
T  47944067 cacacactttatctttctaataaatttaatatgt 47944100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 50721444 - 50721411
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||| ||||||||||||||    
T  50721444 cacacactttatctttccactaaatttaatatgt 50721411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 9088735 - 9088783
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||||| || ||||||||  ||||||| |||||||    
T  9088735 ctctccgttcctttttaagtatctttttagaacattaacactaaaatag 9088783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 19443154 - 19443186
Alignment:
Q  371 acacactttatctttccaataaatttaatatgt 403  Q
    ||||| |||||||||||||||||||||||||||    
T  19443154 acacattttatctttccaataaatttaatatgt 19443186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 4962661 - 4962736
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4962661 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 4962736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 24393807 - 24393884
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24393807 cacacactttatctttccaataaatttaatatgtaacaaacaattattaattactactctctttctccaacaaattcc 24393884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 4678889 - 4678815
Alignment:
Q  371 acacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  4678889 acacactttatctttccaataaatttaatatgtaacaaacaattattagttactactctctttatccaacaaatt 4678815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 39434459 - 39434384
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  39434459 cacacactttatctttccaataaatttaatatgtaacaaataatttttagttgctactctctttctccaacaaatt 39434384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 25290982 - 25290905
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  25290982 cacacattttatgattccaataaatttaatatgtaacaaacaattgttagttactactttccttctccaacaaattcc 25290905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 46671746 - 46671819
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaa 443  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  46671746 cacacactttatttttccaataaatttaatgtgtaacaaacaattgttagttacaactctctttctacaacaaa 46671819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 14771141 - 14771213
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaa 442  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||    
T  14771141 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttctccaacaa 14771213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 15221593 - 15221665
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaa 442  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||    
T  15221593 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttctccaacaa 15221665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 15643664 - 15643588
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattc 446  Q
    |||||| ||||||||||||||||||||||||| ||| ||| |||| |||||||| | ||||||||||||||||||||    
T  15643664 cacacattttatctttccaataaatttaatatttaagaaaaaattattagttacgaatctctttctccaacaaattc 15643588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 4962542 - 4962592
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaa 302  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4962542 ctccgttcctttttaagtgccgttttagaattttaacacaaaaatagtgaa 4962592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 14771021 - 14771076
Alignment:
Q  252 ctccgttcctttttaagtgtc-gttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14771021 ctccgttcctttttaagtgtcagttttagaattttaacacaaaaatagtaaagtgt 14771076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 15221473 - 15221528
Alignment:
Q  252 ctccgttcctttttaagtgtc-gttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  15221473 ctccgttcctttttaagtgtcagttttagaattttaacacaaaaatagtaaagtgt 15221528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 25291102 - 25291047
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaa-ttttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  25291102 ctccgttcctttttaagtgtcgttttagaatttttaacacaaaaatagcgaagtgt 25291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 39429916 - 39429972
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||    
T  39429916 ctctccgttcatttttaagtgtcattttataattttaacacaaaaatagcgaagtgt 39429972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 39434580 - 39434525
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaa-ttttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  39434580 ctccgttcctttttaagtgtcgttttagaatttttaatacaaaaatagcgaagtgt 39434525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 46671624 - 46671671
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaa-ttttaacacaaaaatag 298  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  46671624 ctccgttcctttttaagtgtcgttttagaatttttaacacaaaaatag 46671671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 4679008 - 4678958
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  4679008 gttcctttttaagtgtcattttataattttaacacaaaaatagcgaagtgt 4678958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 15643774 - 15643729
Alignment:
Q  261 tttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  15643774 tttttaagtgtcgttttagaaatttaacacaaaaatagttaagtgt 15643729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 33259047 - 33258994
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||  |||||||    
T  33259047 tccgttcctttttaagtgtcgttttagaatattaacaccaaaataacgaagtgt 33258994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 43369179 - 43369138
Alignment:
Q  249 actctccgttcctttttaagtgtcgttttagaattttaacac 290  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  43369179 actctccgttcctttttaagtgtcgttttagaatattaacac 43369138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 254992 - 254902
Alignment:
Q  152 atctatatctatatacaaaggagatgtatgattttgggttgtcttttttatcttacaattataccctttatataaattattctaattacaat 243  Q
    ||||||| ||||||| ||||| |||  ||||||||| | || |||||| ||||| ||||||||||||| || || |||||||||||||||||    
T  254992 atctatacctatatataaaggggatacatgattttgagctggcttttt-atcttccaattatacccttcatttatattattctaattacaat 254902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 24393688 - 24393730
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaa 294  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  24393688 ctccgtttctttttaagtgtcgttttagaaatttaacacaaaa 24393730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 3835362 - 3835395
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  3835362 cacacactttatctttccaataaatttaatatgt 3835395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 4567893 - 4567860
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  4567893 cacacactttatctttccaataaatttaatatgt 4567860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 27723793 - 27723760
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  27723793 cacacactttatctttccaataaatttaatatgt 27723760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 37124689 - 37124656
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  37124689 cacacactttatctttccaataaatttaatatgt 37124656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 17270236 - 17270185
Alignment:
Q  255 cgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||  |||| || |||||| ||||||||    
T  17270236 cgttcctttttaagtgtcgttttagaaaattaataccaaaataatgaagtgt 17270185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 405
Target Start/End: Original strand, 39430041 - 39430076
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaa 405  Q
    |||||||||||||||| |||||||||||||||||||    
T  39430041 cacacactttatcttttcaataaatttaatatgtaa 39430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 403
Target Start/End: Complemental strand, 47541962 - 47541931
Alignment:
Q  372 cacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||    
T  47541962 cacactttatctttccaataaatttaatatgt 47541931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 16197480 - 16197426
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||| |||||||||||||||| ||||||||  ||||||| |||||||||| ||||    
T  16197480 ctccattcctttttaagtgtctttttagaaaattaacaccaaaatagtgatgtgt 16197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 27723908 - 27723862
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||| ||||||||||||||||  ||||||| |||||||    
T  27723908 ctccgttccttttgaagtgtcgttttagaaaattaacaccaaaatag 27723862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 39430365 - 39430399
Alignment:
Q  411 aattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||||| ||||||||||||||||    
T  39430365 aattgttagttactactccctttctccaacaaatt 39430399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 2271494 - 2271538
Alignment:
Q  402 gtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||    
T  2271494 gtaacaaacaattgtcagttatta-tctctttctccaacaaattcc 2271538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 28226779 - 28226735
Alignment:
Q  402 gtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||    
T  28226779 gtaacaaacaattgttagttaata-tctttttctccaacaaattcc 28226735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Complemental strand, 16197356 - 16197328
Alignment:
Q  375 actttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||||||||||||||||    
T  16197356 actttatctttccaataaatttaatatgt 16197328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 12412973 - 12412893
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 450  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  12412973 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttctccaacaaattccgat 12412893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 450
Target Start/End: Complemental strand, 12425033 - 12424953
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 450  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  12425033 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttctccaacaaattccgat 12424953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 25965361 - 25965430
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaa 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25965361 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaa 25965430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 4959089 - 4959166
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  4959089 cacacactttatctttccattaaatttaatatgtaacaaataattattagttactactctctttctccaacaaattcc 4959166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 34424488 - 34424565
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||    
T  34424488 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctatttccccgacaaattcc 34424565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 27746995 - 27746920
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  27746995 cacacactttatttttccaataaatttaatatttaacaaacaattgttagttactactctctttctccaataaatt 27746920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 7485809 - 7485868
Alignment:
Q  373 acactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctt 432  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  7485809 acactttatctttgcaataaatttagtatgtaacaaacaattgttagttactactctctt 7485868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 34424369 - 34424422
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  34424369 tccgttcctttttaagtgtcgttttaaaattttaacacaaaaatagcgaagtgt 34424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 12413090 - 12413040
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  12413090 gttcctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgt 12413040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 12425150 - 12425100
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  12425150 gttcctttttaagtgtcgttttagaattttaacacaaaaaaagcgaagtgt 12425100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 27747112 - 27747067
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  27747112 tccgttcctttttaagtgtcgttttagaattttaaaacaaaaatag 27747067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 33660754 - 33660709
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  33660754 tccgttcctttttaagtgtcgttttagaatattaatacaaaaatag 33660709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 4958969 - 4959015
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||    
T  4958969 ctccgttcctttttaagtgttgttttagagttttaacactaaaatag 4959015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 1397994 - 1397961
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  1397994 cacacactttatctttccaataaatttaatatgt 1397961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 16806135 - 16806168
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  16806135 cacacactttatctttccaataaatttaatatgt 16806168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 16845416 - 16845449
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  16845416 cacacactttatctttccaataaatttaatatgt 16845449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 5710075 - 5710139
Alignment:
Q  376 ctttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaac 440  Q
    |||||||||||  ||  ||||||||||| |   ||||||||||||||||||||||||||||||||    
T  5710075 ctttatctttctgatcgatttaatatgtgattgacaattgttagttactactctctttctccaac 5710139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Original strand, 45271948 - 45271979
Alignment:
Q  370 cacacactttatctttccaataaatttaatat 401  Q
    ||||||||||||||||||||||||||||||||    
T  45271948 cacacactttatctttccaataaatttaatat 45271979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 7485686 - 7485732
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||| ||||  |||||||||||||||||| |||||||||    
T  7485686 ctccgttcctttgtaaggatcgttttagaattttaactcaaaaatag 7485732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 20170904 - 20170958
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||| |||||||||||||||||||| ||||||   |||||| |||||||    
T  20170904 ctccgttcctctttaagtgtcgttttagaatattaacattgaaatagcgaagtgt 20170958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 11084406 - 11084373
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||| |||||||||||||||||||||||    
T  11084406 cacacactttctctttccaataaatttaatatgt 11084373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 15508083 - 15508038
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||||||||| || ||||| | |||||||    
T  15508083 tccgttcctttttaagtgtcgttttagtatattaacgccaaaatag 15508038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 21253090 - 21253057
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  21253090 cacacactttatcttttcaataaatttaatatgt 21253057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 25713922 - 25713955
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||| |||||||||||||||||||||||    
T  25713922 cacacactttctctttccaataaatttaatatgt 25713955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 41541681 - 41541648
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||| |||||||||||||||||||||||    
T  41541681 cacacactttctctttccaataaatttaatatgt 41541648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 42758169 - 42758136
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaatttt 285  Q
    |||||||||||||| |||||||||||||||||||    
T  42758169 ctccgttcctttttcagtgtcgttttagaatttt 42758136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 42871899 - 42871948
Alignment:
Q  257 ttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||  |||||  ||||||| |||||||    
T  42871899 ttcctttttaagtgtcgttttagaatactaacatcaaaatagcgaagtgt 42871948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 44898645 - 44898601
Alignment:
Q  402 gtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||    
T  44898645 gtaacaaacaattgttagttact-ttctctttctccaccaaattcc 44898601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 16366074 - 16365999
Alignment:
Q  372 cacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16366074 cacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaagaaattcc 16365999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 20202194 - 20202119
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20202194 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 20202119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 36059662 - 36059739
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  36059662 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagttactactcactttctccaacaaattcc 36059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 17558328 - 17558251
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17558328 cacacactttatatttccaataaactaaatatttaacaaacaattgttagttactactctctttctccaacaaattcc 17558251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 32717715 - 32717789
Alignment:
Q  372 cacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||| ||||  |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  32717715 cacactttatttttctgataaatttgatatgtaactaacaattgttagttactactctctttct-caacaaattcc 32717789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 14655335 - 14655282
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttact 424  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14655335 cacacactttatctttccaataa-tttaatatgtaacaaacaattgttagttact 14655282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 32717599 - 32717649
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32717599 gttcctttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgt 32717649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 17558447 - 17558393
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  17558447 ctccgtttttttttaagtgtcgttttagaattttaacacaaaaatagcgaagtgt 17558393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 20202314 - 20202268
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  20202314 ctccgttcctttttaagtgtcgttttaaaattttaacacaaaaatag 20202268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 16366191 - 16366142
Alignment:
Q  257 ttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  16366191 ttccttttgaagtgtcgtttaagaattttaacacaaaaatagtgaagtgt 16366142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 36059554 - 36059597
Alignment:
Q  263 tttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  36059554 tttaagtgtcgatttagaattttaacacaaaaatagtgaagtgt 36059597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 6428594 - 6428561
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  6428594 cacacactttatctttccaataaatttaatatgt 6428561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 400
Target Start/End: Complemental strand, 1584209 - 1584179
Alignment:
Q  370 cacacactttatctttccaataaatttaata 400  Q
    |||||||||||||||||||||||||||||||    
T  1584209 cacacactttatctttccaataaatttaata 1584179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 403
Target Start/End: Complemental strand, 32474678 - 32474648
Alignment:
Q  373 acactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||||||||||||||||||    
T  32474678 acactttatctttccaataaatttaatatgt 32474648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 39585344 - 39585390
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||| ||||||||  ||||||| |||||||    
T  39585344 ctccgttcctttttaagtgtctttttagaaaattaacaccaaaatag 39585390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 280
Target Start/End: Complemental strand, 43346853 - 43346823
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttaga 280  Q
    |||||||||||||||||||||||||||||||    
T  43346853 ctctccgttcctttttaagtgtcgttttaga 43346823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 279
Target Start/End: Complemental strand, 249739 - 249710
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttag 279  Q
    ||||||||||||||||||||||||||||||    
T  249739 ctctccgttcctttttaagtgtcgttttag 249710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 11825179 - 11825224
Alignment:
Q  261 tttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||||  |||| |||||||||| |||||||    
T  11825179 tttttaagtgtcgttttagaaaattaatacaaaaatagcgaagtgt 11825224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 14655466 - 14655409
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttagaatttt-aacacaaaaatagtgaagtgt 306  Q
    ||||| |||||||||||| |||| ||||||| |||| ||||||||||||| |||||||    
T  14655466 ctctctgttcctttttaaatgtcattttagagtttttaacacaaaaatagcgaagtgt 14655409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 279
Target Start/End: Original strand, 16365647 - 16365676
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttag 279  Q
    ||||||||||||||||||||||||||||||    
T  16365647 ctctccgttcctttttaagtgtcgttttag 16365676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 17201989 - 17202022
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||| |||||||||||||||||||||||||||||    
T  17201989 cacaaactttatctttccaataaatttaatatgt 17202022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 28620674 - 28620633
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaa 293  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  28620674 ctccgttcctttttaagtgtctttttagaaaattaacacaaa 28620633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 19804268 - 19804236
Alignment:
Q  371 acacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||| |||||||||||||    
T  19804268 acacactttatctttccaacaaatttaatatgt 19804236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 13779178 - 13779101
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13779178 cacaccctttatctttccaataaatttaatatgtaacagacaattgttagttactactctctttctccaacaaattcc 13779101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 25841574 - 25841648
Alignment:
Q  371 acacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  25841574 acacattttatctttccaataaatttaataaataacaaacaattgttagttactactctctttctccaacaaatt 25841648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 7259416 - 7259484
Alignment:
Q  374 cactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaa 443  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7259416 cactttatctttccaataaaattaatatgtaacaaacaattgttagttacta-tctctttctccaacaaa 7259484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 21959434 - 21959514
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgat 450  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||    
T  21959434 cacacactttatatttctaataaatataatatgtaacaaacaattgttagttactactctctttcttcaacatatttcgat 21959514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 7259291 - 7259337
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7259291 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 7259337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 297073 - 297025
Alignment:
Q  258 tcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  297073 tcctttttaagtgtcgttttagaatattaacaccaaaatagcgaagtgt 297025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 6749406 - 6749361
Alignment:
Q  401 tgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||    
T  6749406 tgtaacaaacaatttttagttacta-tctctttctccaacaaattcc 6749361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 16236982 - 16237028
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||    
T  16236982 ctccgttcctttttaagtgtctttttagaaaattaacacaaaaatag 16237028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 34824321 - 34824271
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||| || |||| ||| |||||||||||    
T  34824321 gttcctttttaagtgtcgttttagaatattcacaccaaattagtgaagtgt 34824271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 38750566 - 38750599
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  38750566 cacacactttatctttccaataaatttaatatgt 38750599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 45647103 - 45647070
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  45647103 cacacactttatctttccaataaatttaatatgt 45647070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 19579003 - 19578967
Alignment:
Q  254 ccgttcctttttaagtgtcgttttagaattttaacac 290  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19579003 ccgttcctttttaagtgtcgttttagaatattaacac 19578967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Complemental strand, 21916070 - 21916039
Alignment:
Q  370 cacacactttatctttccaataaatttaatat 401  Q
    ||||||||||||||||||||||||||||||||    
T  21916070 cacacactttatctttccaataaatttaatat 21916039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 403
Target Start/End: Original strand, 21934016 - 21934047
Alignment:
Q  372 cacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||    
T  21934016 cacactttatctttccaataaatttaatatgt 21934047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 21959317 - 21959368
Alignment:
Q  255 cgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||| |||||||||||||||||| |||||||||| |||||||  |||||||    
T  21959317 cgttcttttttaagtgtcgttttaaaattttaacataaaaataacgaagtgt 21959368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 1405343 - 1405300
Alignment:
Q  402 gtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||    
T  1405343 gtaacaaacaattgttagttact--tctttttctccaacaaattcc 1405300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 2599687 - 2599641
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||| ||||||||  ||||||| |||||||    
T  2599687 ctccgttcctttttaagtgtctttttagaaaattaacactaaaatag 2599641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 6472393 - 6472438
Alignment:
Q  401 tgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||    
T  6472393 tgtaacaaacaatttttagttacta-tctctttctccaataaattcc 6472438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 37030484 - 37030514
Alignment:
Q  373 acactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||||||||||||||||||    
T  37030484 acactttatctttccaataaatttaatatgt 37030514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 38750447 - 38750476
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaa 281  Q
    ||||||||||||||||||||||||||||||    
T  38750447 ctccgttcctttttaagtgtcgttttagaa 38750476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 45667944 - 45667911
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  45667944 cacacactttatcttttcaataaatttaatatgt 45667911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 27818067 - 27818023
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaata 297  Q
    |||||||||||||||||||  ||||||||  ||||||||||||||    
T  27818067 tccgttcctttttaagtgtttttttagaaaattaacacaaaaata 27818023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 11237705 - 11237782
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11237705 cacacattttatctttccaataaatttaatatgtaacgaacaattgttagttactactctctttctccaacaaattcc 11237782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 23697528 - 23697603
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||||||    
T  23697528 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagctattactctatttctccaacaaatt 23697603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 447
Target Start/End: Original strand, 1674364 - 1674440
Alignment:
Q  371 acacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    ||||| ||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||||    
T  1674364 acacattttatcttttcaataaatttaatatctaacaaacggttgttagttactactctctttcttcaacaaattcc 1674440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 31622889 - 31622953
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttc 434  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  31622889 cacacactttatctttacaataaatttaatatgtaaccaacaattgttagttactactatctttc 31622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 2656212 - 2656149
Alignment:
Q  380 atctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  2656212 atctttcaaataaatttaatatg--acaaacaattgttagttactactctctttttccaacaaatt 2656149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 11237586 - 11237640
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11237586 ctccgttactttttaagtgtcgttttagaattataacacaaaaatagtgaagtgt 11237640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 1674244 - 1674289
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaata 297  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  1674244 ctccgttcttttttaagtgtcgttttagaattttaacacaaaaata 1674289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 786691 - 786734
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaat 413  Q
    |||||| |||||||||| ||||||||||||||||||||||||||    
T  786691 cacacaatttatctttcaaataaatttaatatgtaacaaacaat 786734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 31622770 - 31622823
Alignment:
Q  253 tccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||||||||||| || |||||||||| ||||||||||  |||||||    
T  31622770 tccgttcctttttaagtgtcattctagaattttagcacaaaaataacgaagtgt 31622823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 32769502 - 32769469
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  32769502 cacacactttatctttccaataaatttaatatgt 32769469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 41117497 - 41117464
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  41117497 cacacactttatctttccaataaatttaatatgt 41117464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 4395534 - 4395574
Alignment:
Q  266 aagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  4395534 aagtgtcgttttggaattttaacacaaaaatagcgaagtgt 4395574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 1394981 - 1394931
Alignment:
Q  256 gttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||| || |||  ||| |||||||||||    
T  1394981 gttcctttttaagtgtcgttttagaatattcacatcaaattagtgaagtgt 1394931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 19270306 - 19270252
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||  ||| ||||||| ||| ||| |||||||    
T  19270306 ctccgttcctttttaagtgtcgttttgaaatattaacaccaaattagcgaagtgt 19270252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 23697413 - 23697459
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||| ||| |||||| ||||||||||| |||||||||||||||||||    
T  23697413 ctccattcatttttaggtgtcgttttaaaattttaacacaaaaatag 23697459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 36319432 - 36319478
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||| || ||||||||  |||||||||||||||    
T  36319432 ctccgttcctttttaagtatctttttagaaaattaacacaaaaatag 36319478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 52415781 - 52415735
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||||||||||||||||||||||||||  ||| ||| |||||||    
T  52415781 ctccgttcctttttaagtgtcgttttagaaaattaccacgaaaatag 52415735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 11795574 - 11795607
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||| |||||||||||||||||||||||    
T  11795574 cacacactttctctttccaataaatttaatatgt 11795607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 13254258 - 13254291
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||| |||||||||||||||||||||||||    
T  13254258 cacacactatatctttccaataaatttaatatgt 13254291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 36319551 - 36319584
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||| ||||||||||||||||||||||||||    
T  36319551 cacacaccttatctttccaataaatttaatatgt 36319584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 52415660 - 52415627
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||| |||||||||||||||||||||||    
T  52415660 cacacactttttctttccaataaatttaatatgt 52415627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 46027 - 46110
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgatatt 453  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  46027 cacacattttatctttccaataaatttaatatgtaacaaacaatttttagtgactactctctttctccaacaaattcctatatt 46110  T

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Target: scaffold0006; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 453
Target Start/End: Original strand, 46337 - 46392
Alignment:
Q  398 atatgtaacaaacaattgttagttactactctctttctccaacaaattccgatatt 453  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  46337 atatgtaacaaacaatttttagttactactctctttctccaacaaattcctatatt 46392  T

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Target: scaffold0006; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Original strand, 45908 - 45953
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaata 297  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  45908 ctcctttcctttttaagtgtcgttttagaattttaacaaaaaaata 45953  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 9455593 - 9455518
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9455593 cacacattttatttttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 9455518  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 3443431 - 3443508
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||    
T  3443431 cacacactttatctatccaataaatttaatatgtaacaaacaattatgagttactactctttttctcaaacaaattcc 3443508  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 2742651 - 2742726
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaatt 445  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||    
T  2742651 cacacattttatctttccaataaatttaatatgtaacaaacaattgttagttagtagtctctttctctaataaatt 2742726  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 34039509 - 34039455
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  34039509 ctcctttcctttttaaatgtcgttttagaattttaacacaaaaataatgaagtgt 34039455  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 3443318 - 3443364
Alignment:
Q  260 ctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  3443318 ctttttaagcgtcgttttagaattttaacacaaaaatagcgaagtgt 3443364  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 7577822 - 7577865
Alignment:
Q  255 cgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  7577822 cgttcctttttaagcgtcgttttagaattttaacataaaaatag 7577865  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 9455712 - 9455666
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    ||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  9455712 ctccgtttctttttaagtgtcattttaaaattttaacacaaaaatag 9455666  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 401
Target Start/End: Original strand, 1256347 - 1256378
Alignment:
Q  370 cacacactttatctttccaataaatttaatat 401  Q
    ||||||||||||||||||||||||||||||||    
T  1256347 cacacactttatctttccaataaatttaatat 1256378  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 403
Target Start/End: Complemental strand, 3742242 - 3742211
Alignment:
Q  372 cacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||    
T  3742242 cacactttatctttccaataaatttaatatgt 3742211  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 27167504 - 27167457
Alignment:
Q  196 tttttatcttacaattataccctttatataaattattctaattacaat 243  Q
    ||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  27167504 tttttatcttttaattatactctttatttaaattattctaattacaat 27167457  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 2742541 - 2742583
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaa 294  Q
    |||||||| |||| ||| |||||||||||||||||||||||||    
T  2742541 ctccgttctttttgaagagtcgttttagaattttaacacaaaa 2742583  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 7577950 - 7577984
Alignment:
Q  411 aattgttagttactactctctttctccaacaaatt 445  Q
    |||||||||||||||||||||||||| ||||||||    
T  7577950 aattgttagttactactctctttctctaacaaatt 7577984  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 7695005 - 7695038
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  7695005 cacacactttatcttttcaataaatttaatatgt 7695038  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 34146780 - 34146747
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||| |||||||||||||||||||||||||||    
T  34146780 cacacattttatctttccaataaatttaatatgt 34146747  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 38402047 - 38402014
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||||||||||| |||||||||    
T  38402047 cacacactttatctttccaataaacttaatatgt 38402014  T

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Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 7972369 - 7972446
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  7972369 cacacattttatctttccaataaatttaatatgtaacaaaccattgttggttactactctctttctccaacaaattcc 7972446  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 21527031 - 21527107
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattc 446  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21527031 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttggttactactctttttctccaacaaattc 21527107  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 6026669 - 6026622
Alignment:
Q  251 tctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  6026669 tctccgttcctttttaagtgtcgttttagaatattaacacaaaaatag 6026622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 21526911 - 21526965
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  21526911 ctccgttcctttttaagtgtcgttttagaattttaaatcaaaaatagcgaagtgt 21526965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 7972249 - 7972303
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaatagtgaagtgt 306  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  7972249 ctccgtttctttttaagtgacgttttagaattttaacacaaaaataacgaagtgt 7972303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 2437336 - 2437369
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||||||||||||||||||||    
T  2437336 cacacactttatctttccaataaatttaatatgt 2437369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 17752210 - 17752249
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttagaattttaaca 289  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  17752210 ctctccgttcctttttaaatgtcgttttagaatattaaca 17752249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 8049867 - 8049834
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||| |||||||||||||||||||||    
T  8049867 cacacactttatatttccaataaatttaatatgt 8049834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 14093321 - 14093354
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||| ||||||||||||||||||||    
T  14093321 cacacactttatccttccaataaatttaatatgt 14093354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Complemental strand, 25057074 - 25057045
Alignment:
Q  370 cacacactttatctttccaataaatttaat 399  Q
    ||||||||||||||||||||||||||||||    
T  25057074 cacacactttatctttccaataaatttaat 25057045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 26252000 - 26252029
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaa 281  Q
    ||||||||||||||||||||||||||||||    
T  26252000 ctccgttcctttttaagtgtcgttttagaa 26252029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 26252119 - 26252152
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    ||||||||||||||||| ||||||||||||||||    
T  26252119 cacacactttatctttctaataaatttaatatgt 26252152  T

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Target: scaffold1130 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 733 - 657
Alignment:
Q  377 tttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattccgatatt 453  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  733 tttatctttccaataaatttaatatgtaacaaacaattttttgttactactctctttctccaacaaattcctatatt 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 860 - 815
Alignment:
Q  252 ctccgttcctttttaagtgtcgttttagaattttaacacaaaaata 297  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||    
T  860 ctccgttcctttttaagtgtcgttttataattttaacataaaaata 815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 271973 - 272039
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctc 436  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  271973 cacacactttatcttttcaataaatttaatatgtaacaaacaattattagttactactctttttctc 272039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 271845 - 271893
Alignment:
Q  250 ctctccgttcctttttaagtgtcgttttagaattttaacacaaaaatag 298  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  271845 ctcttcgtttctttttaagtgtcgttttagaattttaacacagaaatag 271893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 257295 - 257262
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  257295 cacacactttatcttttcaataaatttaatatgt 257262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 447
Target Start/End: Original strand, 48596 - 48672
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttctccaacaaattcc 447  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||||||    
T  48596 cacacactatattttttcaataaatttaatatgtaacaaacaatttttagttactactct-ttttttcaacaaattcc 48672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 1284 - 1251
Alignment:
Q  370 cacacactttatctttccaataaatttaatatgt 403  Q
    |||||||||||||||| |||||||||||||||||    
T  1284 cacacactttatcttttcaataaatttaatatgt 1251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 5754 - 5798
Alignment:
Q  401 tgtaacaaacaattgttagttactactctctttctccaacaaattc 446  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  5754 tgtaacaaacatttgttagttacta-tctttttctccaacaaattc 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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