View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14176_low_8 (Length: 370)
Name: NF14176_low_8
Description: NF14176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14176_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 8852807 - 8852467
Alignment:
| Q |
16 |
tatacattagtgtttatcatgataagcgcttatgccactaatcgttcgttctaaaatttcaacaatccaacaattagttgaggcacaatacatgaaaatc |
115 |
Q |
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| T |
8852807 |
tatacattagtgtttatcatgataagcgcttatgccactaatcgttccttctaaaatttcaacaatccaacaattagttgaggcacaatacatgaaaatc |
8852708 |
T |
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| Q |
116 |
aattgtgtttccatttagattaacccttcttaagcatttgcagattccaaaatgaataagaaagnnnnnnnnnnnnnnnncaagtaataaataggtaaat |
215 |
Q |
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| T |
8852707 |
aattgtgtttccatttagattaacccttcttaagcatttgcagattccaaaatgaataagaaagaaaaaaaaattaaaaacaagtaataaataggtaaat |
8852608 |
T |
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| Q |
216 |
agaagatttatgatgaatcagagttagaaaaaattggagagaatcttacagagaatgaccttgagaagtttgtattgatcttgtgaaattcaattcaacg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8852607 |
agaagatttatgatgaatcagagttagaaaaaattggagagaatcttacggagaatgaccttgagaagtttgtattgatcttgtgaaattcaattcaacg |
8852508 |
T |
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| Q |
316 |
gaatgatgatcatagaaatggagaatgaaaatctagcgcat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8852507 |
gaatgatgatcatagaaatggagaatgaaaatctagcgcat |
8852467 |
T |
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