View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_high_18 (Length: 477)
Name: NF14177_high_18
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_18 |
 | |
|
| [»] scaffold0098 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 18285538 - 18285995
Alignment:
| Q |
15 |
gtttagtgattgtaacgctgacttcctaggagccttctcttttaaccttggcattggtaactctctgacagctgaactcaatggagcaataatagctgta |
114 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18285538 |
gtttagagattgtaatgctgacttcctaggagccttctcttttaaccttggcattggtaactctctgatagctgaactcaatggagcaataatagctgta |
18285637 |
T |
|
| Q |
115 |
gaaatggcatctcttaaaggttggaatcaattgtggattgaaacagattctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18285638 |
gaaatggcatctcttaaaggttggaatcaattgtggattgaaacaaattctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaact |
18285737 |
T |
|
| Q |
215 |
taagaaacaagtgggaaaattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttgg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18285738 |
taagaaacaagtgggaaaattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttgt |
18285837 |
T |
|
| Q |
315 |
tggcattggtttagaacttagctcttatttttggtgggattcccttccttctcagattagagaagattttgttagaaataggatgggtcttccttatttc |
414 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18285838 |
tagcattggtttagaacttagctcttatttttggtgggattcccttccttctcagattagagaagattttgttagaaataggatgggtcttccttatttc |
18285937 |
T |
|
| Q |
415 |
agattctcctgtttgttttgagggtttggttttatgtcccccctctccctttgcttct |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
18285938 |
agattctcctgtttgttttgagggtttggttctatgtcccccctctccttttgtttct |
18285995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 248 - 472
Target Start/End: Original strand, 12946944 - 12947168
Alignment:
| Q |
248 |
tttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttggtggcattggtttagaacttagctcttatttttg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
12946944 |
tttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttgtttgcattggtttagaacttagctcttatttttg |
12947043 |
T |
|
| Q |
348 |
gtgggattcccttccttctcagattagagaagattttgttagaaataggatgggtcttccttatttcagattctcctgtttgttttgagggtttggtttt |
447 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12947044 |
gtgggattcccttctttctcagattagagaagattttgttagaaataggatgggtcttccttatttcagattctcctgtttgttttgagggtttggtttt |
12947143 |
T |
|
| Q |
448 |
atgtcccccctctccctttgcttct |
472 |
Q |
| |
|
|||||||| |||||| |||| |||| |
|
|
| T |
12947144 |
atgtcccctctctccttttgtttct |
12947168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 133 - 407
Target Start/End: Original strand, 2626239 - 2626513
Alignment:
| Q |
133 |
ggttggaatcaattgtggattgaaacagattctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaacttaagaaacaagtgggaaa |
232 |
Q |
| |
|
||||||||||| || ||||||||||||| || |||||||||||||| ||||| || || |||||||| ||||||||| ||||||| || | |||||| | |
|
|
| T |
2626239 |
ggttggaatcacttatggattgaaacaggctcaatgttagtcactttggctttcaagtctaaatccattgtgccttggcacttaaggaataggtgggata |
2626338 |
T |
|
| Q |
233 |
attgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttggtggcattggtttagaact |
332 |
Q |
| |
|
| ||||||||| | | ||||||||| ||||||| ||| |||||||||||||||| | || ||||||||||||||| | | ||||||||| |||||||| |
|
|
| T |
2626339 |
actgtttacatttactctcctcaatgccttttattgtttctcatatttatagagatgagaaccattgtgctgataagttagttggcattggcttagaact |
2626438 |
T |
|
| Q |
333 |
tagctcttatttttggtgggattcccttccttctcagattagagaagattttgttagaaataggatgggtcttcc |
407 |
Q |
| |
|
| || |||||||||||||| ||||||| |||| |||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
2626439 |
cactactcatttttggtgggatcaccttcctactcaaattagagatgattttactagaaacaggatgggtcttcc |
2626513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 8295131 - 8295031
Alignment:
| Q |
205 |
ccttggaacttaagaaacaagtgggaaaattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctg |
304 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||||| ||||| ||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
8295131 |
ccttggcacttaagaaatagatggcaaaattgttttcatctctgctcctctatgtctttttttgtaactcatatttatagggaaggtaatcattgtgctg |
8295032 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
|
| |
|
|
| T |
8295031 |
a |
8295031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 27727713 - 27727768
Alignment:
| Q |
250 |
tcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctga |
305 |
Q |
| |
|
||||| ||||||||| | || |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27727713 |
tcctctatgtctttttttgtaactcatatttatagggaaggtaatcattgtgctga |
27727768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 27842483 - 27842515
Alignment:
| Q |
274 |
catatttatagagaaggaaatcattgtgctgat |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
27842483 |
catatttatagagaaggaaatcagtgtgctgat |
27842515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 363
Target Start/End: Complemental strand, 15907590 - 15907278
Alignment:
| Q |
53 |
cttttaaccttggcattggtaactctctgacagctgaactcaatggagcaataatagctgtagaaatggcatctcttaaaggttggaatcaattgtggat |
152 |
Q |
| |
|
||||||| |||||||| || || || || || ||| | ||||||||||| || |||| |||| ||||| |||| |||||||||||||| || | ||| |
|
|
| T |
15907590 |
cttttaatcttggcataggcaattcactcactgctaagctcaatggagctatggtagcaatagagatggcttctcaaaaaggttggaatcacttattgat |
15907491 |
T |
|
| Q |
153 |
tgaaacagattctatgttagtcactttagcttttaaatcaaaat-ccatagtgccttggaacttaagaaacaagtgggaaaattgtttacatctgatttc |
251 |
Q |
| |
|
|||||||||||| ||| |||| || | |||||||| |||||| |||| || | |||||| |||| || | ||||| ||||||||||| | |||| |
|
|
| T |
15907490 |
tgaaacagattcaatgctagttacaatggcttttaagtcaaaaaaccattgttctttggaatctaaggaatagatgggataattgtttacacttagtttc |
15907391 |
T |
|
| Q |
252 |
ctcaatgtcttttatggttactcatatttatagagaagg-aaatcattgtgctgataagcttggtggcattggtttagaacttagctcttatttttggtg |
350 |
Q |
| |
|
||||| ||||| || ||| || | || |||||||| || ||| || |||||||||||||||| ||||||||| ||||| || | || | |||||||| |
|
|
| T |
15907390 |
ttcaatatctttcattgtttcttacatctatagagagggtaaaccactgtgctgataagcttgttggcattggcttagatctcaatactcaattttggtg |
15907291 |
T |
|
| Q |
351 |
ggattcccttcct |
363 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15907290 |
ggattcccttcct |
15907278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 23047 - 22956
Alignment:
| Q |
215 |
taagaaacaagtgggaaaattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgat |
306 |
Q |
| |
|
|||||||||| |||||||||||||||||| | || || |||||||||||| | || |||||||||||||| |||| || |||||||||||| |
|
|
| T |
23047 |
taagaaacaaatgggaaaattgtttacatttaatatcatcaatgtctttttttgtaactcatatttataggaaagggaaccattgtgctgat |
22956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 138813 - 138639
Alignment:
| Q |
132 |
aggttggaatcaattgtggattgaaacagattctatgttagtcactttagcttttaaatcaaaatccatagtgccttggaacttaagaaacaagtgggaa |
231 |
Q |
| |
|
|||||||||||| || ||| | ||||| ||||| ||||| || || || ||||||||||| | || || |||||| | |||||||||| |||||| |
|
|
| T |
138813 |
aggttggaatcacttatggctggaaactgattcaatgttggtgaccttggcttttaaatctatgaagattgttccttggcaattaagaaacagatgggaa |
138714 |
T |
|
| Q |
232 |
aattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgat |
306 |
Q |
| |
|
|| ||||||||| | || || |||||||||||| | || |||||||||||||| ||||| || |||||||||||| |
|
|
| T |
138713 |
aactgtttacatttaatatcatcaatgtctttttttgtaactcatatttatagggaagggaaccattgtgctgat |
138639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 22162301 - 22162201
Alignment:
| Q |
205 |
ccttggaacttaagaaacaagtgggaaaattgtttacatctgatttcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctg |
304 |
Q |
| |
|
|||||| |||||||||| | ||| |||||||| | ||||| ||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
22162301 |
ccttggcacttaagaaatagatggcaaaattgtattcatctctgctcctctatgtctttttttgtaactcatatttatagggaaggtaatcattgtgctg |
22162202 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
|
| |
|
|
| T |
22162201 |
a |
22162201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 24812900 - 24812824
Alignment:
| Q |
250 |
tcctcaatgtcttttatggttactcatatttatagagaaggaaatcattgtgctgataagcttggtggcattggttt |
326 |
Q |
| |
|
||||||||||| ||| | ||||||||| ||| ||| |||||||| ||||||||||| ||||||| | ||||||||| |
|
|
| T |
24812900 |
tcctcaatgtcgttttttgttactcatgtttttagggaaggaaaccattgtgctgacaagcttgcagacattggttt |
24812824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 19217724 - 19217688
Alignment:
| Q |
266 |
tggttactcatatttatagagaaggaaatcattgtgc |
302 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
19217724 |
tggttactcatatttatagagaaggcaatcaatgtgc |
19217688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University