View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_high_19 (Length: 473)
Name: NF14177_high_19
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Complemental strand, 3164780 - 3164340
Alignment:
| Q |
16 |
ccatgcacgggaccaaaatgcagaacaatgcacaagaccaaagaacaacaaaaataccaacaagcatagcaacatgaaattttaaactaggtggctttag |
115 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
3164780 |
ccatgcacgagaccaaaatacagaacaatgcacaagaccaaagaacaacaaaaataccaacaagcatagcaacatgaaattttaaagtagatggctttgg |
3164681 |
T |
|
| Q |
116 |
tggtggccgattgtgcccaaatttgcatgtatcgttgtggcggttggaggcagagcggtgctccaccaggccaccactgtggtggcagtcactctattcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | ||| ||||||||||| || |
|
|
| T |
3164680 |
cggtggccgattgtgcccaaatttgcatgtatcattgtggcggttggaggcagagcggtgctccaccacgccaccgctcttgtgttagtcactctatccg |
3164581 |
T |
|
| Q |
216 |
agaagagaaactatgacaattgtaggtgaaagtttcatgggattgcgagtgagtgtggaacttatcaaatgattaatgaattaaaacatttatcacttgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3164580 |
agaagagaaactatgacaattgtaggtgaaagtttcatgggattgcgagtgagtgtggaacttatcaaatgattaatgaattaaaacatttatcacttgt |
3164481 |
T |
|
| Q |
316 |
gtcacactacactcatgtcatttaatagggttgaaagtttgctataccaaattcactttacatgacaaaatgtgaaaattgattctnnnnnnnnnnnntt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3164480 |
gtcacactacactcatgtcatttaatagggttgaaagtttgctataccaaattcactttacatgacaaaatgtgaaaattgattctaaaaaca------- |
3164388 |
T |
|
| Q |
416 |
aagtataacattgtcttgtctcttgagctaattctaacttttcctttg |
463 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3164387 |
aaaaattacattgtcttgtctcttgagctaattctaacttttcctttg |
3164340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University