View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_2 (Length: 922)

Name: NF14177_high_2
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_2
NF14177_high_2
[»] chr2 (4 HSPs)
chr2 (529-922)||(45074653-45075061)
chr2 (344-466)||(3925578-3925700)
chr2 (378-466)||(36636915-36637003)
chr2 (378-464)||(5098718-5098804)
[»] chr6 (3 HSPs)
chr6 (775-922)||(27366226-27366374)
chr6 (775-922)||(27456573-27456721)
chr6 (428-467)||(31216661-31216700)
[»] chr8 (2 HSPs)
chr8 (344-466)||(18022053-18022175)
chr8 (428-466)||(1150051-1150089)
[»] chr3 (5 HSPs)
chr3 (344-466)||(9180035-9180157)
chr3 (428-468)||(30947939-30947979)
chr3 (399-466)||(9106267-9106334)
chr3 (420-463)||(41192370-41192413)
chr3 (428-465)||(33414041-33414078)
[»] chr4 (6 HSPs)
chr4 (344-461)||(54751602-54751719)
chr4 (67-219)||(38038353-38038528)
chr4 (399-466)||(55765481-55765548)
chr4 (428-466)||(10472497-10472535)
chr4 (428-466)||(13635753-13635791)
chr4 (428-466)||(49492540-49492578)
[»] chr5 (5 HSPs)
chr5 (347-461)||(30411027-30411141)
chr5 (378-466)||(33868155-33868243)
chr5 (865-921)||(22631105-22631163)
chr5 (428-466)||(3884063-3884101)
chr5 (428-466)||(30783435-30783473)
[»] chr1 (3 HSPs)
chr1 (837-922)||(51093778-51093863)
chr1 (428-468)||(50351801-50351841)
chr1 (428-466)||(49936965-49937003)
[»] scaffold0179 (1 HSPs)
scaffold0179 (835-890)||(27761-27816)
[»] chr7 (3 HSPs)
chr7 (428-466)||(16933272-16933310)
chr7 (428-466)||(16938655-16938693)
chr7 (378-467)||(44141229-44141318)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 529 - 922
Target Start/End: Complemental strand, 45075061 - 45074653
Alignment:
Q  529 catttgtttaggctatagtgagatcacactggcaagttatgttaatgtattacttacataattgcttattgctacattatttagagatttacttggtcat 628  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  45075061 catttgtttaggctatagtgagatcacactagcaagttatgttaatgtattacttacataattgcctattgctgcattatttagagatttacttggtcat 45074962  T
Q  629 tttaatgattattttggttacttgagtttctattgttgctgccaacgtgtatgtgagtatatattgtagcaattataaggtgt---------------ag 713  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||               ||    
T  45074961 tttaatgatgattttggttacttgagtttctattgttgctgccaacgtgtatgtgagtatatattgtagcaattataagatgtcaaatcaagtgatgtag 45074862  T
Q  714 agtcactaacacagtttgtgtatcattgatcttttatttgttaggtttgggatgacggaaaagggatgccatgcttaatttcttagtcaataaccgagtg 813  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45074861 agtcaataacacattttgtgtatcattgatcttttatttgttaggtttgggatgacggaaaagggatgccatgcttaatttctgagtcaataaccgagtg 45074762  T
Q  814 gaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagt 913  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45074761 gaacaaaagtgacttatatgtatatgcatcatacaagtaataagcatatccaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagt 45074662  T
Q  914 tgatgtcaa 922  Q
    |||||||||    
T  45074661 tgatgtcaa 45074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 344 - 466
Target Start/End: Complemental strand, 3925700 - 3925578
Alignment:
Q  344 gagagtatgagatgtgaaggggagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaagg 443  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3925700 gagagtatgagatgtgaaggagagtgtgagccgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagg 3925601  T
Q  444 acttatgcaccataacttttgcc 466  Q
    |||||||||||||||||||||||    
T  3925600 acttatgcaccataacttttgcc 3925578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 36636915 - 36637003
Alignment:
Q  378 gattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    |||||||||||||||||||| ||||||| |||||  ||| | ||||||||||| ||||||  || ||||||||||  ||||||||||||    
T  36636915 gattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataacttttgcc 36637003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 378 - 464
Target Start/End: Complemental strand, 5098804 - 5098718
Alignment:
Q  378 gattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttg 464  Q
    |||||||||||||||| ||  ||| ||| |||||  ||| | ||||| ||||||||||||| || ||||||||||  ||||||||||    
T  5098804 gattattacacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 5098718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 7e-64; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 775 - 922
Target Start/End: Original strand, 27366226 - 27366374
Alignment:
Q  775 agggatgccatgcttaatttcttagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaat-aagcatatctaggaaattg 873  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  27366226 agggatgccatgcttaatttctgagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattg 27366325  T
Q  874 ggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaa 922  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27366326 ggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaa 27366374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 775 - 922
Target Start/End: Original strand, 27456573 - 27456721
Alignment:
Q  775 agggatgccatgcttaatttcttagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaat-aagcatatctaggaaattg 873  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  27456573 agggatgccatgcttaatttctgagtcaataaccgagtggaacaaaagtgacttatatgtatatgcatcatacaagtaataaagcatatccaggaaattg 27456672  T
Q  874 ggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaa 922  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  27456673 ggagagtgaaagaggaatatcataagcttaacttcgaagttaatgtcaa 27456721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 467
Target Start/End: Complemental strand, 31216700 - 31216661
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgccg 467  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  31216700 ggtgcataaggaaatgacttatgcaccataacttttgccg 31216661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 344 - 466
Target Start/End: Complemental strand, 18022175 - 18022053
Alignment:
Q  344 gagagtatgagatgtgaaggggagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaagg 443  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18022175 gagagtatgagatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagg 18022076  T
Q  444 acttatgcaccataacttttgcc 466  Q
    |||||||||||||||||||||||    
T  18022075 acttatgcaccataacttttgcc 18022053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 1150051 - 1150089
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  1150051 ggtgcataagggaataacttatgcaccataacttttgcc 1150089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 6e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 344 - 466
Target Start/End: Original strand, 9180035 - 9180157
Alignment:
Q  344 gagagtatgagatgtgaaggggagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaagg 443  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9180035 gagagtatgagatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagg 9180134  T
Q  444 acttatgcaccataacttttgcc 466  Q
    |||||||||||||||||||||||    
T  9180135 acttatgcaccataacttttgcc 9180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 30947939 - 30947979
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgccgc 468  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  30947939 ggtgcataaggaaatgacttatgcaccataacttttgccgc 30947979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 9106334 - 9106267
Alignment:
Q  399 aatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||| ||||| || | | ||||| | ||||||||||| || ||||||||||||||||||||||||    
T  9106334 aatctgatggttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 9106267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 41192370 - 41192413
Alignment:
Q  420 ttatgtagggtgcataagggaaggacttatgcaccataactttt 463  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  41192370 ttatgtacggtgcataaggaaatgacttatgcaccataactttt 41192413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Original strand, 33414041 - 33414078
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgc 465  Q
    ||||||||||| || |||||||||||||||||||||||    
T  33414041 ggtgcataaggaaatgacttatgcaccataacttttgc 33414078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 344 - 461
Target Start/End: Complemental strand, 54751719 - 54751602
Alignment:
Q  344 gagagtatgagatgtgaaggggagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaagg 443  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  54751719 gagagtatgagatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaagc 54751620  T
Q  444 acttatgcaccataactt 461  Q
    ||||||||||||||||||    
T  54751619 acttatgcaccataactt 54751602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 67 - 219
Target Start/End: Complemental strand, 38038528 - 38038353
Alignment:
Q  67 aacaacaagattttgagtcacataagaaaacatagtactactac---cagggaaaggggacacagcaagaaactgattttccctaagcaaaacctaaaca 163  Q
    ||||||||||| | |||||||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38038528 aacaacaagatatcgagtcacataagaaaacatactactactactaccagggaaaggggacacagcaagaaagtgattttccctaagcaaaacctaaaca 38038429  T
Q  164 aacaaa--------------------caagattattacatttaagcagcgttctaaatgcgagtgtcccaaagtga 219  Q
    ||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38038428 aacaaacaagtcagaagaagctacaacaagattattacatttaagcagcgttctaaatgcgagtgtcccaaagtga 38038353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 55765548 - 55765481
Alignment:
Q  399 aatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||| ||||| || | | ||||| | ||||||||||| || ||||||||||||||||||||||||    
T  55765548 aatctgatggttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttgcc 55765481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 10472535 - 10472497
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  10472535 ggtgcataaggaaatgacttatgcaccataacttttgcc 10472497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 13635753 - 13635791
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  13635753 ggtgcataaggaaatgacttatgcaccataacttttgcc 13635791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 49492540 - 49492578
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  49492540 ggtgcataaggaaatgacttatgcaccataacttttgcc 49492578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 5e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 347 - 461
Target Start/End: Original strand, 30411027 - 30411141
Alignment:
Q  347 agtatgagatgtgaaggggagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaaggact 446  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||    
T  30411027 agtatgagatgtgaaggagagtgtgagctgagattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgcagggtgcataagggaaaccct 30411126  T
Q  447 tatgcaccataactt 461  Q
    |||||||||||||||    
T  30411127 tatgcaccataactt 30411141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 378 - 466
Target Start/End: Complemental strand, 33868243 - 33868155
Alignment:
Q  378 gattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| |||||||  |||| || |||||  ||| | ||||| ||||||||||||| || ||||||||||  ||||||||||||    
T  33868243 gattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttgcc 33868155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 921
Target Start/End: Original strand, 22631105 - 22631163
Alignment:
Q  865 aggaaattgggagagtgaaagaggaata--acataagcttaacttcgaagttgatgtca 921  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||| ||||| ||||||    
T  22631105 aggaaattgggagagtgaaagaggaatagcacatttgcttaacttctaagttaatgtca 22631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 3884063 - 3884101
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  3884063 ggtgcataaggaaatgacttatgcaccataacttttgcc 3884101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 30783473 - 30783435
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  30783473 ggtgcataaggaaatgacttatgcaccataacttttgcc 30783435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 837 - 922
Target Start/End: Original strand, 51093778 - 51093863
Alignment:
Q  837 atgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaataacataagcttaacttcgaagttgatgtcaa 922  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||||| | |||| |||||||||| ||||| |||||||    
T  51093778 atgcatcatacaagtaataagcatatccagaaaatagggagagtgaaagaggaacatcatatgcttaacttctaagttaatgtcaa 51093863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 50351841 - 50351801
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgccgc 468  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  50351841 ggtgcataaggaaatgacttatgcaccataacttttgccgc 50351801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 49936965 - 49937003
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  49936965 ggtgcataaggaaatgacttatgcaccataacttttgcc 49937003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 835 - 890
Target Start/End: Original strand, 27761 - 27816
Alignment:
Q  835 atatgcatcatacaagtaataagcatatctaggaaattgggagagtgaaagaggaa 890  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  27761 atatgcatcatacaagtaataagcatatccaataaattgggagagtgaaagaggaa 27816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 16933272 - 16933310
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  16933272 ggtgcataaggaaatgacttatgcaccataacttttgcc 16933310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 428 - 466
Target Start/End: Original strand, 16938655 - 16938693
Alignment:
Q  428 ggtgcataagggaaggacttatgcaccataacttttgcc 466  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  16938655 ggtgcataaggaaatgacttatgcaccataacttttgcc 16938693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 44141229 - 44141318
Alignment:
Q  378 gattattacacgtgtaaaaccaatctgaaggttgaaaagagcttatgtagggtgcataagggaaggacttatgcaccataacttttgccg 467  Q
    |||||||||||||||| |   |||| || |||||  ||| | ||||| ||||||||||||| || ||||||||||  |||||||||||||    
T  44141229 gattattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcatgataacttttgccg 44141318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University