View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_20 (Length: 465)

Name: NF14177_high_20
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_20
NF14177_high_20
[»] chr4 (1 HSPs)
chr4 (10-453)||(5988587-5989030)
[»] chr3 (29 HSPs)
chr3 (10-454)||(2919589-2920033)
chr3 (10-453)||(11497210-11497653)
chr3 (11-224)||(5051962-5052175)
chr3 (55-453)||(5965931-5966329)
chr3 (10-433)||(11490763-11491186)
chr3 (14-448)||(4130014-4130448)
chr3 (56-139)||(7492228-7492311)
chr3 (348-448)||(4091888-4091988)
chr3 (365-441)||(7491970-7492046)
chr3 (348-448)||(4114629-4114729)
chr3 (348-441)||(5052299-5052392)
chr3 (66-138)||(911564-911636)
chr3 (348-448)||(4060151-4060251)
chr3 (348-448)||(4079760-4079860)
chr3 (362-393)||(9839506-9839537)
chr3 (362-393)||(9850384-9850415)
chr3 (362-393)||(10363191-10363222)
chr3 (362-393)||(10433437-10433468)
chr3 (362-393)||(10581255-10581286)
chr3 (365-393)||(10032651-10032679)
chr3 (365-393)||(10089438-10089466)
chr3 (365-393)||(10127576-10127604)
chr3 (365-393)||(10196321-10196349)
chr3 (365-393)||(10261346-10261374)
chr3 (365-393)||(10528006-10528034)
chr3 (365-393)||(10664174-10664202)
chr3 (365-393)||(10672330-10672358)
chr3 (365-393)||(11769882-11769910)
chr3 (365-393)||(13854073-13854101)
[»] chr8 (1 HSPs)
chr8 (55-441)||(18388136-18388522)
[»] chr5 (1 HSPs)
chr5 (58-453)||(16446921-16447316)
[»] chr1 (4 HSPs)
chr1 (14-139)||(17311816-17311941)
chr1 (348-448)||(13933775-13933875)
chr1 (319-441)||(17312124-17312246)
chr1 (80-130)||(14005101-14005151)
[»] scaffold0603 (2 HSPs)
scaffold0603 (55-173)||(4706-4824)
scaffold0603 (347-453)||(4426-4532)
[»] scaffold0267 (1 HSPs)
scaffold0267 (339-441)||(19087-19189)
[»] scaffold0083 (2 HSPs)
scaffold0083 (362-393)||(56995-57026)
scaffold0083 (362-393)||(57804-57835)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 5988587 - 5989030
Alignment:
Q  10 catcatcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtcttta 109  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5988587 catcatcacaacaagggatgaaagagttgcaagatccatgcaaatctttctctctgtccactatttgagacctctggaaagtgaagattgttggtcttta 5988686  T
Q  110 gttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcag 209  Q
    ||||| ||||||||||||||  |||| | |||| |||||||||| || ||||||||||||||||||||||||||       |||||||||||||||||||    
T  5988687 gttgctagacatgcatttggcacatgcagcgacataaaacaatccaatctagaagaaattggcaggaaaattgcaaaaaaatgtgatggattaccatcag 5988786  T
Q  210 ctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggat 309  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||| || ||||| ||||||||| |  |||||||||| ||||| |    
T  5988787 ctgcaataaaagtcggggctcttctccgtaccaatttgtccccaaatgactggaattatgtgttagaatgtaacattttgaagttgataggttatgggtt 5988886  T
Q  310 gcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaa 409  Q
    ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5988887 gcatgccaatctacaattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaa 5988986  T
Q  410 atgatggtagtgcagttgtggattgcagaaggtttagtataatc 453  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||    
T  5988987 atgagggtagttcagttgtggattgcagaaggtttagtagaatc 5989030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 2919589 - 2920033
Alignment:
Q  10 catcatcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtcttta 109  Q
    ||||||||| ||| | |||||||||||| ||| ||| ||||| | |||| ||| |||||| ||| |||||| | ||||||  |||||||| |||||||||    
T  2919589 catcatcactacacgagatgaaagagttccaatatccatgcaaacctttttttatgtccactatatgagacatctggaaacagaagattgctggtcttta 2919688  T
Q  110 gttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcag 209  Q
    |||||||||||||||||||||||||   || ||| |||||  ||| | |||||||||||||| ||  |||||||       ||||| |||||||||| ||    
T  2919689 gttgccagacatgcatttggagcattggacaaccaaaaacggtctgatctagaagaaattggtagagaaattgcaaaaaaatgtgacggattaccattag 2919788  T
Q  210 ctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggat 309  Q
    ||||||||  ||||||||||||||| | ||| ||||||||   | || ||||| | ||| |||||| |  ||||||| |||  ||||||| | ||| | |    
T  2919789 ctgcaatatcagttggggctcttcttcatactgaattgtctgtagataactggaagtatgtgctaggagttaacattggggaattgatagattatgaggt 2919888  T
Q  310 gcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaa 409  Q
     |||||   ||||| |||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2919889 ccaagccggtctacaattgagctacttctatctttcgactcctttaaaacgctgctttgcatattgttcaatttttccaaaggagtccatcttagaaaaa 2919988  T
Q  410 atgatggtagtgcagttgtggattgcagaaggtttagtataatct 454  Q
    | || |||||| |||||||||||||||||||| |||||| |||||    
T  2919989 aagagggtagttcagttgtggattgcagaaggcttagtagaatct 2920033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 453
Target Start/End: Complemental strand, 11497653 - 11497210
Alignment:
Q  10 catcatcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtcttta 109  Q
    ||||||||||||| | |||||||||||| ||| ||| ||||| | |||| ||| |||||| ||||||| |||| ||||||| ||||||||||||||||||    
T  11497653 catcatcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgaaacctctggaaagcgaagattgttggtcttta 11497554  T
Q  110 gttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcag 209  Q
    |||||||| |||||||||||||||||||| |||  | ||| ||| || |||||||||||||||||| |||||||       ||| | ||  |||||| ||    
T  11497553 gttgccaggcatgcatttggagcatgtaatgacaaacaacgatccaatctagaagaaattggcagggaaattgcaaaaaaatgttacggtataccattag 11497454  T
Q  210 ctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggat 309  Q
    ||||| ||  | ||| |||| |||| || |  ||||||||| || || ||||| || || |||||    || |||||||||  |  |||||| |||   |    
T  11497453 ctgcagtatcaattgcggcttttcttcgcattgaattgtccccatattactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgt 11497354  T
Q  310 gcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaa 409  Q
    |||| ||  ||||| | ||| ||||    |||||||  ||||||||||| | |||||||||||||| ||||||||||| ||| | ||| |||||||||||    
T  11497353 gcaacctgctctacaactgaactaccactatctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagaaaaa 11497254  T
Q  410 atgatggtagtgcagttgtggattgcagaaggtttagtataatc 453  Q
    |   || |||| ||| |||||||||||||||| |||||| ||||    
T  11497253 aatgtgatagttcagctgtggattgcagaaggcttagtagaatc 11497210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 5051962 - 5052175
Alignment:
Q  11 atcatcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttag 110  Q
    |||||||||||| | |||||||||||| ||| ||| ||| | | |||| ||| |||||| |||||||||||||||||||| |||||||| |||||| |||    
T  5051962 atcatcacaacacgagatgaaagagttccaaaatccatggaaagctttttttatgtccactatttgagacctttggaaagcgaagattgctggtctatag 5052061  T
Q  111 ttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcagc 210  Q
    |||||||||||||||||||| || ||||| ||| ||||| ||| || || ||||||||||| |||||||||||       |||||||||||||||| |||    
T  5052062 ttgccagacatgcatttggaccacgtaactaccaaaaactatcaaatcttgaagaaattggaaggaaaattgcagaaaagtgtgatggattaccattagc 5052161  T
Q  211 tgcaataaaagttg 224  Q
    |||| ||| |||||    
T  5052162 tgcagtaacagttg 5052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 55 - 453
Target Start/End: Original strand, 5965931 - 5966329
Alignment:
Q  55 ctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaacgacctaaaacaatct 154  Q
    ||||||||||||||| || |||| ||||||||||||||||||||| ||||||||| ||||| | ||||||||||||| |  |||||||| |   |||||     
T  5965931 ctttctttctgtccactacttgacacctttggaaagtgaagattgctggtctttacttgccgggcatgcatttggagaacataacgaccaacgccaatcc 5966030  T
Q  155 aaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcagctgcaataaaagttggggctcttctccgtaccgaattgtcctcaa 254  Q
    || |||||||||||||||||  || ||||       ||| |||||| |||||  |||||| ||  | |||||| | |||| || ||| |||||||| ||     
T  5966031 aatctagaagaaattggcagagaagttgcaaataaatgttatggatcaccatttgctgcagtagcacttggggatattcttcgcaccaaattgtccccag 5966130  T
Q  255 atgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggatgcaagctaatctacgattgagctactctc-atctttcgactcctt 353  Q
    || ||||| ||||| ||||| ||||| ||||| ||   ||||||| |||||   | | | ||  | ||| | ||| ||| || | |||||||||||| ||    
T  5966131 attactggaattatgtgctacaaagtgacattcggttattgatagatcatgatgttcgaccttttatacaactgaacta-tcactatctttcgactcttt 5966229  T
Q  354 taaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtataatc 453  Q
    |||||  ||||||||||||||||||||||||||| ||| ||||| || |||||||||   ||||||| |||||||||||||||||||| |||||| ||||    
T  5966230 taaaaaactgctttgcatattgttcaatttttccgaagaagtccatcatagaaaaaaatttggtagttcagttgtggattgcagaaggcttagtagaatc 5966329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 433
Target Start/End: Complemental strand, 11491186 - 11490763
Alignment:
Q  10 catcatcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtcttta 109  Q
    ||||||||||||| | ||||||||| |  ||| ||| ||||| |  |||  || |||||| |||||||||||| | ||||| ||||||||||||||||||    
T  11491186 catcatcacaacacgagatgaaagactaccaaaatccatgcaaactttttcttatgtccactatttgagacctctagaaagcgaagattgttggtcttta 11491087  T
Q  110 gttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcag 209  Q
    |||||||||||||||||||| ||||||||||| | | ||| ||| || ||||||||| | |||| |||||||||       |||||||||||||||| ||    
T  11491086 gttgccagacatgcatttggggcatgtaacgagcaacaacgatccaatctagaagaagtaggcaagaaaattgcaaaaaaatgtgatggattaccattag 11490987  T
Q  210 ctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggat 309  Q
    |||  ||| || ||| ||   |||| |  |  ||||||||| |  || ||||| || || |||||  | || |||||||||  ||  ||  | ||  | |    
T  11490986 ctgttatagaacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggt 11490887  T
Q  310 gcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaa 409  Q
    |||| ||  ||||| ||||||||||  | |||| ||| |||||||||||   ||||||| |||||||||||||||||| ||| ||||| |||||||||||    
T  11490886 gcaacctgctctacaattgagctaccattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaagtccatcttagaaaaa 11490787  T
Q  410 atgatggtagtgcagttgtggatt 433  Q
    |   ||||||| ||||||||||||    
T  11490786 aatgtggtagttcagttgtggatt 11490763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 4130014 - 4130448
Alignment:
Q  14 atcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttg 113  Q
    ||||||||| | |||||||||||||||  | | ||||| | |||||||||||||||   ||| ||| |||||||||  |||||||||||||||||| |||    
T  4130014 atcacaacacgagatgaaagagttgcattaccaatgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttg 4130113  T
Q  114 ccagacatgcatttggagcatgtaacgacctaaaacaatctaaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcagctgc 213  Q
    ||||||||||||||| | || ||||| ||| | ||| ||| || |||||| ||||||| ||  |||||||       |||||||| ||||||| ||||||    
T  4130114 ccagacatgcatttgtaacaagtaactaccaacaacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgc 4130213  T
Q  214 aataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggatgcaa 313  Q
    ||||  | |||| | | |||| || ||| |||||||   | || | ||| || || |  || ||||||  |||||||  |||| || | ||| | |||||    
T  4130214 aatagcacttggaggttttcttcgcaccaaattgtcacaagattattggaatgatgttttaaaaagtagtatttgggaattgacagatgatgaggtgcaa 4130313  T
Q  314 gctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatga 413  Q
     |   ||| | |||||||||   ||||||| |  ||||| ||||||| |||||||| ||||||||||||||||| ||| | ||  || |||| ||||  |    
T  4130314 ccagctctgctattgagctatcgtcatcttcctgctcctataaaaggatgctttgcttattgttcaatttttccgaagaactcaatcatagagaaaaaaa 4130413  T
Q  414 tggtagtgcagttgtggattgcagaaggtttagta 448  Q
    ||||||| || ||||||||||||||||| ||||||    
T  4130414 tggtagttcaattgtggattgcagaaggcttagta 4130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 7492311 - 7492228
Alignment:
Q  56 tttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaac 139  Q
    ||||||| ||| |||| ||||||||||||||||| ||||||| | |||||||||||| | ||||||||||||||||||||||||    
T  7492311 tttctttttgtgcattgtttgagacctttggaaattgaagatggatggtctttagtttctagacatgcatttggagcatgtaac 7492228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 4091988 - 4091888
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 447  Q
    ||||||||||||| || ||||| ||||||||||||||| | ||| | ||  ||||| | ||||  |||||||| ||||||||||||||||||||||||||    
T  4091988 ctcctttaaaaggatgttttgcttattgttcaattttttcgaagaattcaatcttaaagaaaaaaatggtagttcagttgtggattgcagaaggtttagt 4091889  T
Q  448 a 448  Q
    |    
T  4091888 a 4091888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 441
Target Start/End: Complemental strand, 7492046 - 7491970
Alignment:
Q  365 tttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaagg 441  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||  ||| |||| ||||||||||||||||||||    
T  7492046 tttgaatattgttctatttttccaaagaagtccatcttagaaaaaaatatgttagttcagttgtggattgcagaagg 7491970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 4114729 - 4114629
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 447  Q
    ||||||||||| | |||||||| || |||||||||||||| ||| | ||  | ||||| ||||  ||||| || ||||||||||||||||||||||||||    
T  4114729 ctcctttaaaaagatgctttgcttactgttcaatttttccgaagaactcaattttagagaaaaatatggtcgttcagttgtggattgcagaaggtttagt 4114630  T
Q  448 a 448  Q
    |    
T  4114629 a 4114629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 441
Target Start/End: Original strand, 5052299 - 5052392
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaagg 441  Q
    |||||||||||   ||||||| |||||||||||||||||| ||| | | | ||||||||||||   |||| || ||||||||||||||||||||    
T  5052299 ctcctttaaaacagtgctttgaatattgttcaatttttccgaagaaatacatcttagaaaaaaatgtggtggttcagttgtggattgcagaagg 5052392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 911636 - 911564
Alignment:
Q  66 tccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaa 138  Q
    |||| ||||||| |||| | | |||||| || |||||||||||| |||||| |||||||||||||||||||||    
T  911636 tccactatttgacacctataggaagtgacgagtgttggtctttacttgccaaacatgcatttggagcatgtaa 911564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 4060251 - 4060151
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 447  Q
    ||||||||||||| || ||||| || |||||||||||| | ||| | ||  ||||||| ||||  | |||| | ||||||||||||||||||||||||||    
T  4060251 ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt 4060152  T
Q  448 a 448  Q
    |    
T  4060151 a 4060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 4079860 - 4079760
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 447  Q
    ||||||||||||| || ||||| || |||||||||||| | ||| | ||  ||||||| ||||  | |||| | ||||||||||||||||||||||||||    
T  4079860 ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt 4079761  T
Q  448 a 448  Q
    |    
T  4079760 a 4079760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 9839506 - 9839537
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  9839506 tgctttgcatattgttcaatttttccaaagga 9839537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 9850384 - 9850415
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  9850384 tgctttgcatattgttcaatttttccaaagga 9850415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 10363222 - 10363191
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  10363222 tgctttgcatattgttcaatttttccaaagga 10363191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 10433468 - 10433437
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  10433468 tgctttgcatattgttcaatttttccaaagga 10433437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 10581255 - 10581286
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  10581255 tgctttgcatattgttcaatttttccaaagga 10581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10032651 - 10032679
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10032651 tttgcatattgttcaatttttccaaagga 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10089438 - 10089466
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10089438 tttgcatattgttcaatttttccaaagga 10089466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10127576 - 10127604
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10127576 tttgcatattgttcaatttttccaaagga 10127604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10196321 - 10196349
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10196321 tttgcatattgttcaatttttccaaagga 10196349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10261346 - 10261374
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10261346 tttgcatattgttcaatttttccaaagga 10261374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10528006 - 10528034
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10528006 tttgcatattgttcaatttttccaaagga 10528034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10664174 - 10664202
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10664174 tttgcatattgttcaatttttccaaagga 10664202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 10672330 - 10672358
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  10672330 tttgcatattgttcaatttttccaaagga 10672358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Original strand, 11769882 - 11769910
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  11769882 tttgcatattgttcaatttttccaaagga 11769910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 393
Target Start/End: Complemental strand, 13854101 - 13854073
Alignment:
Q  365 tttgcatattgttcaatttttccaaagga 393  Q
    |||||||||||||||||||||||||||||    
T  13854101 tttgcatattgttcaatttttccaaagga 13854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 55 - 441
Target Start/End: Original strand, 18388136 - 18388522
Alignment:
Q  55 ctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaacgacctaaaacaatct 154  Q
    ||||| ||| ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||| || ||| |||   |||| |||    
T  18388136 ctttcattcggtccactatttgagacctctggagagtgaagattgctggtctttagttgccagacatgcatttagagcttggaacaaccagcaacagtct 18388235  T
Q  155 aaactagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcagctgcaataaaagttggggctcttctccgtaccgaattgtcctcaa 254  Q
     | |||||||||||||| ||  |||||||       ||| | ||| |||||| ||||||||||  | |||||| | |||| |     || |||||| |||    
T  18388236 gatctagaagaaattggtagagaaattgcaaaaaaatgttacggaataccattagctgcaatatcacttggggattttcttcacttagatttgtccccaa 18388335  T
Q  255 atgactggtattatatgctagaaagtaacatttgggggttgataggtcatgggatgcaagctaatctacgattgagctactctcatctttcgactccttt 354  Q
     | ||||| |||||  |||||||||| |||||||||  ||| ||| | |||   ||||   |  ||||| ||||| ||||  | |||| |||||||||||    
T  18388336 gttactggaattatgcgctagaaagtgacatttgggaattggtagattatgatgtgcaccgtgctctacaattgatctacagttatctatcgactccttt 18388435  T
Q  355 aaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaagg 441  Q
    |||| | |||||||||| |||||||||||| |||||| ||||| ||||| |||||||  ||||||| ||||||||||||||||||||    
T  18388436 aaaacggtgctttgcattttgttcaattttcccaaagaagtccatcttaaaaaaaattgtggtagttcagttgtggattgcagaagg 18388522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 58 - 453
Target Start/End: Original strand, 16446921 - 16447316
Alignment:
Q  58 tctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaacgacctaaaacaatctaaa 157  Q
    ||||| ||| || |||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||| | ||  | | ||     
T  16446921 tctttatgttcactatttgagacctctcgaaagtgaagattgctggtctttaattgccagacatgcatttggaccatgtaactaccaagaaagaaccaat 16447020  T
Q  158 ctagaagaaattggcaggaaaattgcnnnnnnntgtgatggattaccatcagctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatg 257  Q
    |||||||||||||||||| |||||||       |||| |||||| ||||    |||| ||  | ||||| ||||||| || | | || | ||| || ||     
T  16447021 ctagaagaaattggcagggaaattgcaaaaaaatgtggtggattgccatatattgcactagcacttgggactcttcttcgcagcaaaatttccccagatt 16447120  T
Q  258 actggtattatatgctagaaagtaacatttgggggttgataggtcatgggatgcaagctaatctacgattgagctactctcatctttcgactcctttaaa 357  Q
    ||||| ||||| ||||||||| |||||||||||  |||| || |  || | ||||||    | ||||||||||||    | |||| | |  |||| ||||    
T  16447121 actggaattatgtgctagaaactaacatttgggaattgacagattctgaggtgcaagaggctttacgattgagcttacattatctgttgcttcctctaaa 16447220  T
Q  358 aggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtataatc 453  Q
    ||  ||||||||||||||||||| |||||||||| | ||| |||||||||| | || | || | ||||||||||||||||||||||||||| ||||    
T  16447221 agaatgctttgcatattgttcaaattttccaaagaattccatcttagaaaagaagacgataattcagttgtggattgcagaaggtttagtagaatc 16447316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 17311816 - 17311941
Alignment:
Q  14 atcacaacaagggatgaaagagttgcaagatcgatgcagatctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttg 113  Q
    ||||||||| | |||||||||||| ||| ||| ||||| | |||| ||| |||||| |||||||||||| | ||||| ||||||||||||||||||||||    
T  17311816 atcacaacacgagatgaaagagttccaaaatccatgcaaacctttttttatgtccactatttgagacctctagaaagcgaagattgttggtctttagttg 17311915  T
Q  114 ccagacatgcatttggagcatgtaac 139  Q
    |||||||||||||| || ||||||||    
T  17311916 ccagacatgcatttagaacatgtaac 17311941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 13933775 - 13933875
Alignment:
Q  348 ctcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt 447  Q
    ||||||||||||| |||||||| || |||||||||||||| ||| | ||  ||||||| ||||  |||||||| ||||||||||||||||||||||||||    
T  13933775 ctcctttaaaaggatgctttgcttactgttcaatttttccgaagaactcaatcttagagaaaaatatggtagttcagttgtggattgcagaaggtttagt 13933874  T
Q  448 a 448  Q
    |    
T  13933875 a 13933875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 441
Target Start/End: Original strand, 17312124 - 17312246
Alignment:
Q  319 tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta 418  Q
    ||||| ||||||||||| | |||||  |  |||||||||| | ||||||| |||||||||||||||||| ||| | ||| ||||||||||||    ||||    
T  17312124 tctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatattgttcaatttttccgaagaaatccatcttagaaaaaaatgcggta 17312223  T
Q  419 gtgcagttgtggattgcagaagg 441  Q
    || || |||||||||||||||||    
T  17312224 gttcaattgtggattgcagaagg 17312246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 14005151 - 14005101
Alignment:
Q  80 cctttggaaagtgaagattgttggtctttagttgccagacatgcatttgga 130  Q
    |||||||  ||||||||||| ||||||||| |||||| |||||||||||||    
T  14005151 cctttggcgagtgaagattgctggtctttacttgccaaacatgcatttgga 14005101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 4824 - 4706
Alignment:
Q  55 ctttctttctgtccattatttgagacctttggaaagtgaagattgttggtctttagttgccagacatgcatttggagcatgtaacgacctaaaacaatct 154  Q
    ||||||||||||||| || |||| |||| |||||||||||||||| ||||||||| ||||  ||| ||||||||||||||||||||||| | | |||||     
T  4824 ctttctttctgtccactacttgacacctctggaaagtgaagattgctggtctttacttgctggacttgcatttggagcatgtaacgaccaacatcaatcc 4725  T
Q  155 aaactagaagaaattggca 173  Q
    || ||||||||||||||||    
T  4724 aatctagaagaaattggca 4706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 453
Target Start/End: Complemental strand, 4532 - 4426
Alignment:
Q  347 actcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttag 446  Q
    |||||||||||| | |||||||  ||||||||||||||||||||| ||||| || |||||||||   ||  ||| |||||||||||||||||||| ||||    
T  4532 actcctttaaaacgatgctttgagtattgttcaatttttccaaagaagtccatcatagaaaaaaatttgacagttcagttgtggattgcagaaggcttag 4433  T
Q  447 tataatc 453  Q
    || ||||    
T  4432 taaaatc 4426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 441
Target Start/End: Original strand, 19087 - 19189
Alignment:
Q  339 atctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga 438  Q
    ||||| || ||||||||||| | || ||||| || |||||||||||||||||| | ||| ||||  ||||||  |||||||| ||||| ||||| |||||    
T  19087 atcttccggctcctttaaaaagatgttttgcttactgttcaatttttccaaagaactccatcttgcaaaaaaatatggtagttcagttatggatggcaga 19186  T
Q  439 agg 441  Q
    |||    
T  19187 agg 19189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 57026 - 56995
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  57026 tgctttgcatattgttcaatttttccaaagga 56995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 393
Target Start/End: Complemental strand, 57835 - 57804
Alignment:
Q  362 tgctttgcatattgttcaatttttccaaagga 393  Q
    ||||||||||||||||||||||||||||||||    
T  57835 tgctttgcatattgttcaatttttccaaagga 57804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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