View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_high_21 (Length: 457)
Name: NF14177_high_21
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 5036280 - 5035998
Alignment:
| Q |
19 |
aagttatagatgtatgtaaaaattatacaaacaagtctccttataagataagttaagacattttgttagcaaaaatccttaagaacaaatctctccgctt |
118 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5036280 |
aagttatagatgtatgta----ttatactaacaagtctccttataagataagttaagacattttgttagcaaaaacccttaagaacaaatctctccgctt |
5036185 |
T |
|
| Q |
119 |
tttgttcacttactaggaccggaaggcgccaaactagagttaagtctcaaaattataagttaagaaaagcttnnnnnnnnnnttagttatgaagtcctcg |
218 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5036184 |
tttgttcacttactagggccgaaaggcgccaaactagagttaagcctcaaaattataagttaagaaaagcttaaaaaaaaaattagttatgaagtcctcg |
5036085 |
T |
|
| Q |
219 |
tcaagattaaagccatatcttctttgacacataatttaaattttagacggggtgatatttattttaattttataaaagtcttacata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5036084 |
tcaagattaaagccatatcttctttgacacataatttaaattttagacggggtgatatttattttaattttataaaagtcttacata |
5035998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 330 - 457
Target Start/End: Complemental strand, 5035966 - 5035837
Alignment:
| Q |
330 |
aaaacatctataaatttgctttaggtcccaaaaaagtttggaccaatctgtatgatcattaaagcaaattttacagcttcttttttgttgatacaaaccg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5035966 |
aaaacatctataaatttgctttaggtcccaaaaaagtttggaccaatctgtatgatcattaaagcaaattttacagcttcttttttgttgatacaaaccg |
5035867 |
T |
|
| Q |
430 |
cgttg--tttgctcttccactagcaaattt |
457 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
5035866 |
cgttgtatttgctcttccactagcaaattt |
5035837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University