View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_24 (Length: 425)
Name: NF14177_high_24
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 19539971 - 19539569
Alignment:
| Q |
19 |
gttttggggactacactttgtagccatgtcggaaaggcagccaagccatctcccaaattcaaattcctttaccacctcccactctccacataccccgtat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | || |
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| T |
19539971 |
gttttggggactacactttgtagccatgtcggaaaggcagccaagccatctcccaaattcaaattccattacaacctcccactctccacataccc-gcat |
19539873 |
T |
|
| Q |
119 |
ggatactgatctcttctcggacattagcgatacttctccaggcataactcgagttatatccaatagtgccttttagaacatttggtcagaagaagttcgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19539872 |
ggatactgatctcttctcggacattagcgatacttcttcaggcataactcgagttatatccaatagtgccttttagaacatttggtcagaagaagttcgt |
19539773 |
T |
|
| Q |
219 |
cattgtgaattagacgccatccctttattgccaaattataatcttttaagagtatataaatccaaccttcctttcttcttcttctccttcaacacattct |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19539772 |
cattttgaattagacgccatccctttattgccaaattataatcttttaagagtacataaatccaaccttcctttcttcttcttctccttcaacacattct |
19539673 |
T |
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| Q |
319 |
gcaactaatacagtgaattttcttttctattttaaggttggcacgtccttttattcataagttcaaaatttggataaatagagcttcattctcacacctt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19539672 |
gcaactaatacagtgaattttcttttctattttaaggttggcacgtccccttattcataagttcaaaatttggataaatagagcttcattctcacacctt |
19539573 |
T |
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| Q |
419 |
tgct |
422 |
Q |
| |
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|||| |
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| T |
19539572 |
tgct |
19539569 |
T |
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