View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_25 (Length: 414)

Name: NF14177_high_25
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_25
NF14177_high_25
[»] chr1 (32 HSPs)
chr1 (247-289)||(666402-666444)
chr1 (138-179)||(29092093-29092135)
chr1 (138-179)||(1688249-1688290)
chr1 (138-179)||(12625856-12625897)
chr1 (139-179)||(25561349-25561389)
chr1 (145-177)||(36269758-36269790)
chr1 (137-180)||(23555009-23555052)
chr1 (138-179)||(2909125-2909167)
chr1 (138-179)||(5584512-5584554)
chr1 (247-289)||(17760399-17760440)
chr1 (247-289)||(34154252-34154293)
chr1 (247-289)||(37649530-37649571)
chr1 (247-289)||(41817213-41817254)
chr1 (138-179)||(46001573-46001615)
chr1 (247-289)||(46001692-46001733)
chr1 (247-289)||(52068061-52068102)
chr1 (138-179)||(52068169-52068211)
chr1 (149-182)||(666303-666336)
chr1 (247-288)||(4204694-4204735)
chr1 (139-180)||(32287589-32287630)
chr1 (138-178)||(37649649-37649690)
chr1 (139-179)||(41817331-41817372)
chr1 (138-179)||(42333652-42333693)
chr1 (138-179)||(45565137-45565178)
chr1 (134-178)||(50226043-50226088)
chr1 (249-289)||(27255327-27255366)
chr1 (138-178)||(33579242-33579282)
chr1 (142-178)||(36886881-36886917)
chr1 (247-279)||(36886995-36887027)
chr1 (145-177)||(49102986-49103018)
chr1 (139-179)||(50084133-50084173)
chr1 (137-180)||(51246594-51246638)
[»] chr8 (16 HSPs)
chr8 (138-179)||(31297380-31297421)
chr8 (135-171)||(27085353-27085389)
chr8 (138-179)||(13406435-13406476)
chr8 (122-179)||(79645-79700)
chr8 (139-177)||(8228542-8228580)
chr8 (138-172)||(41455264-41455298)
chr8 (126-181)||(41866147-41866200)
chr8 (138-180)||(44879554-44879596)
chr8 (138-180)||(44880325-44880367)
chr8 (247-288)||(6943380-6943421)
chr8 (139-180)||(8948634-8948675)
chr8 (247-279)||(79546-79578)
chr8 (138-166)||(5911471-5911499)
chr8 (247-279)||(29584300-29584332)
chr8 (147-179)||(36837520-36837552)
chr8 (133-180)||(40985105-40985153)
[»] chr7 (17 HSPs)
chr7 (138-179)||(31055382-31055423)
chr7 (138-179)||(33187878-33187919)
chr7 (139-177)||(35264906-35264944)
chr7 (122-179)||(2826279-2826334)
chr7 (138-170)||(19791698-19791730)
chr7 (142-177)||(1277950-1277985)
chr7 (141-180)||(4788033-4788072)
chr7 (247-289)||(4058060-4058101)
chr7 (247-289)||(13044273-13044314)
chr7 (247-289)||(16805481-16805522)
chr7 (150-180)||(31179998-31180028)
chr7 (138-179)||(45940432-45940474)
chr7 (139-179)||(16805599-16805640)
chr7 (135-172)||(17884233-17884270)
chr7 (248-289)||(32650305-32650345)
chr7 (247-279)||(10591827-10591859)
chr7 (135-179)||(12624406-12624450)
[»] chr5 (11 HSPs)
chr5 (138-179)||(3925813-3925854)
chr5 (133-172)||(19389857-19389896)
chr5 (247-289)||(8944171-8944213)
chr5 (138-179)||(6373145-6373186)
chr5 (138-177)||(41638362-41638401)
chr5 (138-177)||(43496895-43496934)
chr5 (247-289)||(10843160-10843201)
chr5 (133-179)||(18675745-18675791)
chr5 (138-179)||(39428949-39428990)
chr5 (247-279)||(14569973-14570005)
chr5 (122-179)||(38568399-38568454)
[»] chr3 (19 HSPs)
chr3 (141-181)||(35989127-35989167)
chr3 (138-178)||(51686514-51686554)
chr3 (145-179)||(3537223-3537257)
chr3 (142-172)||(3458325-3458355)
chr3 (247-289)||(3537332-3537373)
chr3 (138-179)||(33944672-33944714)
chr3 (138-179)||(38639596-38639638)
chr3 (247-289)||(38639705-38639746)
chr3 (247-289)||(48908806-48908847)
chr3 (145-179)||(53888502-53888536)
chr3 (142-179)||(1132957-1132994)
chr3 (138-179)||(2420678-2420718)
chr3 (138-179)||(47714705-47714746)
chr3 (138-179)||(48444514-48444555)
chr3 (138-179)||(49183703-49183744)
chr3 (138-178)||(53664632-53664673)
chr3 (136-176)||(18257722-18257762)
chr3 (247-279)||(51686632-51686664)
chr3 (133-180)||(52620856-52620904)
[»] scaffold0598 (1 HSPs)
scaffold0598 (136-179)||(9437-9480)
[»] chr6 (12 HSPs)
chr6 (138-177)||(4464953-4464992)
chr6 (135-178)||(22788551-22788594)
chr6 (141-179)||(6688068-6688106)
chr6 (133-179)||(26713866-26713912)
chr6 (138-179)||(24874967-24875008)
chr6 (138-178)||(32222010-32222051)
chr6 (247-289)||(6687862-6687903)
chr6 (247-289)||(32719213-32719254)
chr6 (138-179)||(32719408-32719450)
chr6 (247-289)||(33590243-33590284)
chr6 (145-178)||(20820563-20820596)
chr6 (138-179)||(33590360-33590401)
[»] chr4 (21 HSPs)
chr4 (134-180)||(38136865-38136912)
chr4 (247-289)||(368183-368225)
chr4 (141-179)||(45899405-45899443)
chr4 (138-180)||(30198802-30198845)
chr4 (138-180)||(9119817-9119859)
chr4 (138-179)||(12708866-12708908)
chr4 (247-289)||(28175378-28175419)
chr4 (138-179)||(29114265-29114307)
chr4 (247-289)||(30198685-30198726)
chr4 (247-289)||(33500646-33500687)
chr4 (247-289)||(38136748-38136789)
chr4 (137-179)||(38366035-38366077)
chr4 (145-179)||(42650651-42650685)
chr4 (138-168)||(47063700-47063730)
chr4 (145-179)||(48620312-48620346)
chr4 (138-179)||(15498826-15498867)
chr4 (146-179)||(49668136-49668169)
chr4 (247-279)||(12708757-12708789)
chr4 (147-179)||(13984996-13985028)
chr4 (133-180)||(28175495-28175543)
chr4 (247-279)||(29114166-29114198)
[»] chr2 (26 HSPs)
chr2 (133-172)||(30523249-30523288)
chr2 (247-289)||(1270616-1270658)
chr2 (138-172)||(41100144-41100178)
chr2 (138-179)||(43572576-43572618)
chr2 (138-179)||(11522212-11522253)
chr2 (133-169)||(39819900-39819936)
chr2 (133-179)||(12941830-12941877)
chr2 (135-178)||(16465184-16465227)
chr2 (122-179)||(35550190-35550244)
chr2 (138-179)||(1364840-1364882)
chr2 (138-179)||(11515051-11515093)
chr2 (247-289)||(13018392-13018433)
chr2 (149-179)||(16813653-16813683)
chr2 (149-179)||(16852932-16852962)
chr2 (138-179)||(26905811-26905853)
chr2 (138-179)||(34757612-34757654)
chr2 (247-289)||(37194393-37194434)
chr2 (247-289)||(43572458-43572499)
chr2 (138-179)||(13765971-13766012)
chr2 (138-179)||(28539458-28539499)
chr2 (138-178)||(37194274-37194315)
chr2 (248-289)||(41503281-41503322)
chr2 (134-169)||(15555388-15555424)
chr2 (247-279)||(31082927-31082959)
chr2 (145-177)||(36870278-36870310)
chr2 (138-178)||(38293896-38293936)
[»] scaffold0119 (2 HSPs)
scaffold0119 (247-289)||(30579-30621)
scaffold0119 (247-289)||(37247-37289)
[»] scaffold0248 (2 HSPs)
scaffold0248 (247-289)||(110-151)
scaffold0248 (147-179)||(228-260)
[»] scaffold0128 (1 HSPs)
scaffold0128 (247-289)||(26506-26548)
[»] scaffold0031 (1 HSPs)
scaffold0031 (138-179)||(93538-93580)
[»] scaffold0274 (1 HSPs)
scaffold0274 (138-179)||(15925-15966)
[»] scaffold0028 (1 HSPs)
scaffold0028 (138-179)||(35487-35528)


Alignment Details
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 666402 - 666444
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  666402 gtaatcatatgcattaatttatcattctctaaacaaactactc 666444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 29092093 - 29092135
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  29092093 ctcatttggaggaactaaaaaattgtattggaggagagttttg 29092135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 1688290 - 1688249
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  1688290 ctcatttggggaactcaaaaattgtattgggggagagttttg 1688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 12625897 - 12625856
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  12625897 ctcatttggagaactaaaaacttgtattggaggagagttttg 12625856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 25561389 - 25561349
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  25561389 tcatttggggaactaaaaaattatattggaggagggttttg 25561349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 36269758 - 36269790
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttt 177  Q
    |||||||||||||||||||||||||||||||||    
T  36269758 ggggaactaaaaaattgtattggaggagagttt 36269790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 23555052 - 23555009
Alignment:
Q  137 tctcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||    
T  23555052 tctcatttggggaactcaaaaattatattgaaggagagttttga 23555009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 2909125 - 2909167
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  2909125 ctcatttggaggaactaaaaaattgtattggaggagggttttg 2909167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 5584512 - 5584554
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  5584512 ctcatttggaggaactaaaaaattgtattggaggagggttttg 5584554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 17760440 - 17760399
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  17760440 gtaatcatatgcattaatttatcattctctaaa-aaactactc 17760399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 34154293 - 34154252
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  34154293 gtaatcatatgcattaatttatcattctctaaa-aaactactc 34154252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 37649571 - 37649530
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  37649571 gtaatcatatgcattaatttatcattctctaaa-aaactactc 37649530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 41817254 - 41817213
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  41817254 gtaatcatatgcattaatttatcattctctaaa-aaactactc 41817213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 46001573 - 46001615
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  46001573 ctcatttggaggaactaaaaaattgtatttgaggagagttttg 46001615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 46001692 - 46001733
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  46001692 gtaatcatatgcattaatttatcattctctaaa-aaactactc 46001733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 52068102 - 52068061
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  52068102 gtaatcatatgcattaatttatcattctctaaa-aaactactc 52068061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 52068211 - 52068169
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  52068211 ctcatttggaggaactaaaaaattgtattggaggagggttttg 52068169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 666303 - 666336
Alignment:
Q  149 aactaaaaaattgtattggaggagagttttgaat 182  Q
    ||||||||||||||||||||| ||||||||||||    
T  666303 aactaaaaaattgtattggagcagagttttgaat 666336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 4204735 - 4204694
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactact 288  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  4204735 gtaatcatatgtattaatttatcattctctaaaaaaactact 4204694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 32287589 - 32287630
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||| |||||||||||||||||||||| ||| |||||||    
T  32287589 tcatttgaggaactaaaaaattgtattggatgagggttttga 32287630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 37649690 - 37649649
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  37649690 ctcatttggaggaactaaaaaattgtattggaggagggtttt 37649649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 41817372 - 41817331
Alignment:
Q  139 tcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  41817372 tcatttggaggaactaaaaaattgtattggaggagggttttg 41817331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 42333652 - 42333693
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||| |||||||||| | |||||||||||||||||||||    
T  42333652 ctcatttagggaactaaagagttgtattggaggagagttttg 42333693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 45565137 - 45565178
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||| ||||||||||||||||||||| |||| ||||||    
T  45565137 ctcatttgaggaactaaaaaattgtattgggggagggttttg 45565178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 50226043 - 50226088
Alignment:
Q  134 ccttctcatttggg-gaactaaaaaattgtattggaggagagtttt 178  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||    
T  50226043 ccttctcatttggaagaactaaaaaattgtattggaggagcgtttt 50226088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 27255327 - 27255366
Alignment:
Q  249 aatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  27255327 aatcatatgcattaatttatcattctctaaa-aaactactc 27255366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 33579242 - 33579282
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  33579242 ctcatttggggaactcaaaagttgtattggaggagggtttt 33579282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 36886881 - 36886917
Alignment:
Q  142 tttggggaactaaaaaattgtattggaggagagtttt 178  Q
    |||||||||||||||||||| |||||||||| |||||    
T  36886881 tttggggaactaaaaaattgcattggaggagggtttt 36886917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 36886995 - 36887027
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  36886995 gtaatcatatgcattaatttatcattctctaaa 36887027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 49103018 - 49102986
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttt 177  Q
    |||||||||||||||||||||||||||| ||||    
T  49103018 ggggaactaaaaaattgtattggaggagggttt 49102986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 50084133 - 50084173
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  50084133 tcatttggggaactaaaaaattgtattttagtagagttttg 50084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 51246638 - 51246594
Alignment:
Q  137 tctcatttgggg-aactaaaaaattgtattggaggagagttttga 180  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||    
T  51246638 tctcatttgggggaactcaaaaattgtattggaggagggttttga 51246594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 31297421 - 31297380
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  31297421 ctcatttggggaactaaaaaattgtattggaggagggttttg 31297380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 27085353 - 27085389
Alignment:
Q  135 cttctcatttggggaactaaaaaattgtattggagga 171  Q
    |||||||||||||||||||||||||||||||||||||    
T  27085353 cttctcatttggggaactaaaaaattgtattggagga 27085389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 13406435 - 13406476
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  13406435 ctcatttggggaactaaaaaattgaattggaagagagttttg 13406476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 79700 - 79645
Alignment:
Q  122 atactaaaccctccttctcatttgggg-aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||   ||||||||| |||||||||||||||||||||||| ||||||    
T  79700 atactaaaccctcct---catttgggggaactaaaaaattgtattggaggagggttttg 79645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 8228542 - 8228580
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttt 177  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  8228542 tcatttggggaactaaaaaatcgtattggatgagagttt 8228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 41455264 - 41455298
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggag 172  Q
    |||||||||| ||||||||||||||||||||||||    
T  41455264 ctcatttgggaaactaaaaaattgtattggaggag 41455298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 41866200 - 41866147
Alignment:
Q  126 taaaccctccttctcatttggggaa-ctaaaaaattgtattggaggagagttttgaa 181  Q
    ||||||||||||   |||||||||| |||||||||||||||||||||| ||||||||    
T  41866200 taaaccctcctt---atttggggaaactaaaaaattgtattggaggagggttttgaa 41866147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 44879554 - 44879596
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||| ||||||||||||||||||||||||||  |||||||    
T  44879554 ctcatttagggaactaaaaaattgtattggaggaaggttttga 44879596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 44880367 - 44880325
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||| ||||||||||||||||||||||||||  |||||||    
T  44880367 ctcatttagggaactaaaaaattgtattggaggaaggttttga 44880325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 6943421 - 6943380
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactact 288  Q
    |||||||||||||||||||||||||||  |||| ||||||||    
T  6943421 gtaatcatatgcattaatttatcattctttaaaaaaactact 6943380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 8948634 - 8948675
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  8948634 tcattttgggaactaaaaaattgtattggagacgagttttga 8948675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 79578 - 79546
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  79578 gtaatcatatgcattaatttatcattctctaaa 79546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 5911499 - 5911471
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattg 166  Q
    |||||||||||||||||||||||||||||    
T  5911499 ctcatttggggaactaaaaaattgtattg 5911471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 29584300 - 29584332
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  29584300 gtaatcatatgcattaatttatcattctctaaa 29584332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 36837552 - 36837520
Alignment:
Q  147 ggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||| ||||||    
T  36837552 ggaactaaaaaattgtattggaggagggttttg 36837520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 40985153 - 40985105
Alignment:
Q  133 tccttctcatttgggg-aactaaaaaattgtattggaggagagttttga 180  Q
    |||| ||||||||||| |||| ||||||||||||||||||| |||||||    
T  40985153 tcctcctcatttgggggaactcaaaaattgtattggaggagggttttga 40985105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 31055382 - 31055423
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  31055382 ctcatttggggaactaaaaaattgtattggaggagggttttg 31055423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 33187919 - 33187878
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  33187919 ctcatttgaggaactaaaaaattgtattggaggagagttttg 33187878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 35264944 - 35264906
Alignment:
Q  139 tcatttggggaactaaaaaattgtattggaggagagttt 177  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  35264944 tcatttggggaactaaaaaattgtattggaggagggttt 35264906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 2826334 - 2826279
Alignment:
Q  122 atactaaaccctccttctcatttgggg-aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||   ||||||||| |||||||||||||||||||||||| ||||||    
T  2826334 atactaaaccctcct---catttgggggaactaaaaaattgtattggaggagggttttg 2826279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 19791698 - 19791730
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggagg 170  Q
    |||||||||||||||||||||||||||||||||    
T  19791698 ctcatttggggaactaaaaaattgtattggagg 19791730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 1277950 - 1277985
Alignment:
Q  142 tttggggaactaaaaaattgtattggaggagagttt 177  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1277950 tttggggaactaaaaaattgtattggatgagagttt 1277985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 4788072 - 4788033
Alignment:
Q  141 atttggggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  4788072 atttggggaactaaaaaattgtattggagtagggttttga 4788033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 4058101 - 4058060
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  4058101 gtaatcatatgcattaatttatcattctctaaa-aaactactc 4058060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 13044273 - 13044314
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  13044273 gtaatcatatgcattaatttatcattctctaaa-aaactactc 13044314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 16805522 - 16805481
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  16805522 gtaatcatatgcattaatttatcattctctaaa-aaactactc 16805481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 31180028 - 31179998
Alignment:
Q  150 actaaaaaattgtattggaggagagttttga 180  Q
    |||||||||||||||||||||||||||||||    
T  31180028 actaaaaaattgtattggaggagagttttga 31179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 45940474 - 45940432
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  45940474 ctcatttggaggaactaaaaaattgtattggagtagagttttg 45940432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 16805640 - 16805599
Alignment:
Q  139 tcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  16805640 tcatttggaggaactaaaaaattgtattggaggagggttttg 16805599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 17884270 - 17884233
Alignment:
Q  135 cttctcatttggggaactaaaaaattgtattggaggag 172  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  17884270 cttcttatttgaggaactaaaaaattgtattggaggag 17884233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 32650345 - 32650305
Alignment:
Q  248 taatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  32650345 taatcatatgcattaatttatcattctctaaa-aaactactc 32650305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 10591859 - 10591827
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  10591859 gtaatcatatgcattaatttatcattctctaaa 10591827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 12624450 - 12624406
Alignment:
Q  135 cttctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||| ||||||||||||||||| ||| ||||||| |||||||||    
T  12624450 cttcttatttggggaactaaaaatttgcattggagtagagttttg 12624406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 3925854 - 3925813
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  3925854 ctcatttggggaactaaaaaattgtattggatgagagttttg 3925813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 19389896 - 19389857
Alignment:
Q  133 tccttctcatttggggaactaaaaaattgtattggaggag 172  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  19389896 tcctcctcatttggggaactaaaaaattgtattggaggag 19389857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 8944171 - 8944213
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  8944171 gtaatcatatgcattaatttatcattctctaaaaaaactactc 8944213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 6373145 - 6373186
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  6373145 ctcatttggggaactaaaaaattgtattcgaggaaagttttg 6373186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 41638362 - 41638401
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttt 177  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  41638362 ctcatttggggaactaaaaaattgtattgggggagggttt 41638401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 43496934 - 43496895
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttt 177  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  43496934 ctcatttggggaacttaaaaattgtattggaggagggttt 43496895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 10843160 - 10843201
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  10843160 gtaatcatatgcattaatttatcattctctaaa-aaactactc 10843201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 18675791 - 18675745
Alignment:
Q  133 tccttctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||| ||| |||||||| || ||||||    
T  18675791 tccttctcatttggggaactaaaagattatattggagaagggttttg 18675745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 39428949 - 39428990
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||| ||||||||||||||||||| |||||| ||||||    
T  39428949 ctcatttgaggaactaaaaaattgtattagaggagggttttg 39428990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 14570005 - 14569973
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  14570005 gtaatcatatgcattaatttatcattctctaaa 14569973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 38568454 - 38568399
Alignment:
Q  122 atactaaaccctccttctcatttgggg-aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||   ||||||||| |||||||||||| ||||||||||| ||||||    
T  38568454 atactaaaccctcct---catttgggggaactaaaaaattatattggaggagggttttg 38568399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 35989127 - 35989167
Alignment:
Q  141 atttggggaactaaaaaattgtattggaggagagttttgaa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  35989127 atttggggaactaaaaaattgtattagaggagagttttgaa 35989167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 51686514 - 51686554
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  51686514 ctcatttggggaactaaaaaattgtattggaggagggtttt 51686554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 3537223 - 3537257
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||||||||||    
T  3537223 ggggaactaaaaaattgtattggaggagagttttg 3537257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 3458355 - 3458325
Alignment:
Q  142 tttggggaactaaaaaattgtattggaggag 172  Q
    |||||||||||||||||||||||||||||||    
T  3458355 tttggggaactaaaaaattgtattggaggag 3458325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 3537332 - 3537373
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  3537332 gtaatcatatgcattaatttatcattctctaaa-aaactactc 3537373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 33944714 - 33944672
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  33944714 ctcatttggaggaactaaaaaattgtattggaggagggttttg 33944672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 38639596 - 38639638
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  38639596 ctcatttggaggaactaaaaaattgtattggaggagggttttg 38639638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 38639705 - 38639746
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  38639705 gtaatcatatgcattaatttatcattctctaaa-aaactactc 38639746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 48908847 - 48908806
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  48908847 gtaatcatatgcattaatttatcattctctaaa-aaactactc 48908806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 53888502 - 53888536
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||| ||||||    
T  53888502 ggggaactaaaaaattgtattggaggagggttttg 53888536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 1132994 - 1132957
Alignment:
Q  142 tttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  1132994 tttggggaactcaaaaattgtattggaggagggttttg 1132957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 2420678 - 2420718
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  2420678 ctcatttggggaactcaaaaattgtattgg-ggagagttttg 2420718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 47714746 - 47714705
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| |||||||||||||| |||| ||||||    
T  47714746 ctcatttggggaactcaaaaattgtattgggggagggttttg 47714705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 48444514 - 48444555
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||| |||||||||||||||||| ||| ||||||    
T  48444514 ctcatttggggatctaaaaaattgtattggatgagggttttg 48444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 49183703 - 49183744
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||| |||||| ||||||    
T  49183703 ctcatttggagaactaaaaaattgtattagaggagggttttg 49183744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 53664673 - 53664632
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  53664673 ctcatttggaggaactaaaaaattgtattggaggagggtttt 53664632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 18257762 - 18257722
Alignment:
Q  136 ttctcatttggggaactaaaaaattgtattggaggagagtt 176  Q
    ||||||| ||| |||||||||| ||||||||||||||||||    
T  18257762 ttctcatctggagaactaaaaagttgtattggaggagagtt 18257722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 51686632 - 51686664
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  51686632 gtaatcatatgcattaatttatcattctctaaa 51686664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 52620904 - 52620856
Alignment:
Q  133 tccttctcatttggg-gaactaaaaaattgtattggaggagagttttga 180  Q
    |||| |||||||||| ||||| ||||||||||||||||||| |||||||    
T  52620904 tcctcctcatttgggagaactcaaaaattgtattggaggagggttttga 52620856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 9480 - 9437
Alignment:
Q  136 ttctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||| |||||||| ||||||    
T  9480 ttctcatttggggaactaaaaaattgtactggaggagggttttg 9437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 4464953 - 4464992
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttt 177  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4464953 ctcatttggggaactaaaaaattgtattggaggagggttt 4464992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 22788594 - 22788551
Alignment:
Q  135 cttctcatttggggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||||| |||||||||||||||||||||||||| |||||    
T  22788594 cttctcatttgaggaactaaaaaattgtattggaggagggtttt 22788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 6688106 - 6688068
Alignment:
Q  141 atttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6688106 atttagggaactaaaaaattgtattggaggagagttttg 6688068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 26713866 - 26713912
Alignment:
Q  133 tccttctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26713866 tcctcctcatttggggaactcaaaaattgtattggaggagggttttg 26713912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 24875008 - 24874967
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  24875008 ctcatttggggaactaaaacattgtattggaggagggttttg 24874967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 32222010 - 32222051
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  32222010 ctcatttggaggaactaaaaaattgtattggaggagagtttt 32222051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 6687903 - 6687862
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  6687903 gtaatcatatgcattaatttatcattctctaaa-aaactactc 6687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 32719254 - 32719213
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  32719254 gtaatcatatgcattaatttatcattctctaaa-aaactactc 32719213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 32719450 - 32719408
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  32719450 ctcatttggaggaactaaaaaattgtattggaggagggttttg 32719408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 33590284 - 33590243
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  33590284 gtaatcatatgcattaatttatcattctctaaa-aaactactc 33590243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 20820596 - 20820563
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagtttt 178  Q
    |||||||||||||||||||||||| |||||||||    
T  20820596 ggggaactaaaaaattgtattggatgagagtttt 20820563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 33590401 - 33590360
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||| |||||||||||||||||| ||| ||||||    
T  33590401 ctcatttggggagctaaaaaattgtattggatgagggttttg 33590360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 38136912 - 38136865
Alignment:
Q  134 ccttctcatttgg-ggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  38136912 ccttctcatttggaggaactaaaaaattgtattggaggagggttttga 38136865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 368183 - 368225
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  368183 gtaatcatatgcattaatttatcattctctaaaaaaactactc 368225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 45899405 - 45899443
Alignment:
Q  141 atttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  45899405 atttggggaactaaaaaattgtattggaggagggttttg 45899443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 30198845 - 30198802
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttga 180  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  30198845 ctcatttggaggaactaaaaaattgtattggaggagggttttga 30198802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 9119859 - 9119817
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttga 180  Q
    |||||||||| |||||||| ||||||||||||||| |||||||    
T  9119859 ctcatttgggaaactaaaatattgtattggaggagggttttga 9119817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 12708908 - 12708866
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  12708908 ctcatttggaggaactaaaaaattgtattggaggagggttttg 12708866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 28175419 - 28175378
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  28175419 gtaatcatatgcattaatttatcattctctaaa-aaactactc 28175378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 29114307 - 29114265
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  29114307 ctcatttggaggaactaaaaaattgtattggaggagggttttg 29114265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 30198726 - 30198685
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  30198726 gtaatcatatgcattaatttatcattctctaaa-aaactactc 30198685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 33500646 - 33500687
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  33500646 gtaatcatatgcattaatttatcattctctaaa-aaactactc 33500687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 38136789 - 38136748
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  38136789 gtaatcatatgcattaatttatcattctctaaa-aaactactc 38136748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 38366035 - 38366077
Alignment:
Q  137 tctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||| |||||||||||||| |||| ||||||    
T  38366035 tctcatttggggaactcaaaaattgtattgggggagggttttg 38366077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 42650651 - 42650685
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||| ||||||    
T  42650651 ggggaactaaaaaattgtattggaggagggttttg 42650685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 47063700 - 47063730
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattgga 168  Q
    |||||||||||||||||||||||||||||||    
T  47063700 ctcatttggggaactaaaaaattgtattgga 47063730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 48620312 - 48620346
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||| ||||||    
T  48620312 ggggaactaaaaaattgtattggaggagggttttg 48620346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 15498867 - 15498826
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  15498867 ctcatttggggaactcaaaaattgtattggatgagggttttg 15498826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 49668169 - 49668136
Alignment:
Q  146 gggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||||||||||||||| ||||||    
T  49668169 gggaactaaaaaattgtattggaggagggttttg 49668136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 12708789 - 12708757
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  12708789 gtaatcatatgcattaatttatcattctctaaa 12708757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 13985028 - 13984996
Alignment:
Q  147 ggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||| ||||||    
T  13985028 ggaactaaaaaattgtattggaggagggttttg 13984996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 28175543 - 28175495
Alignment:
Q  133 tccttctcatttgg-ggaactaaaaaattgtattggaggagagttttga 180  Q
    |||| ||||||||| |||||||||||||||||| ||||||| |||||||    
T  28175543 tcctcctcatttggaggaactaaaaaattgtataggaggagggttttga 28175495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 29114198 - 29114166
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  29114198 gtaatcatatgcattaatttatcattctctaaa 29114166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 30523249 - 30523288
Alignment:
Q  133 tccttctcatttggggaactaaaaaattgtattggaggag 172  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  30523249 tccttctaatttggggaactaaaaaattgtattggaggag 30523288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 1270658 - 1270616
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  1270658 gtaatcatatgcattaatttatcattctctaaaaaaactactc 1270616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 41100178 - 41100144
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggag 172  Q
    |||||||||||||||||||||||||||||||||||    
T  41100178 ctcatttggggaactaaaaaattgtattggaggag 41100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 43572618 - 43572576
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  43572618 ctcatttggaggaactaaaaaattgtattggaggagagttttg 43572576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 11522253 - 11522212
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  11522253 ctcatttggggaactaaaaagttgtattggaggagggttttg 11522212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 39819900 - 39819936
Alignment:
Q  133 tccttctcatttggggaactaaaaaattgtattggag 169  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39819900 tcctcctcatttggggaactaaaaaattgtattggag 39819936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 12941877 - 12941830
Alignment:
Q  133 tccttctcatttgggg-aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  12941877 tccttctcatttgggggaactagaaaattatattggaggagagttttg 12941830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 16465227 - 16465184
Alignment:
Q  135 cttctcatttggggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||| |||||||||| || ||||||||||||||||||||||    
T  16465227 cttctcaattggggaactgaataattgtattggaggagagtttt 16465184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 35550244 - 35550190
Alignment:
Q  122 atactaaaccctccttctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||   |||||||||||||||||| ||||| ||||| |||||||||    
T  35550244 atactaaaccctcct---catttggggaactaaaaagttgtactggagtagagttttg 35550190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 1364840 - 1364882
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  1364840 ctcatttggaggaactaaaaaattgtattggaggagggttttg 1364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 11515051 - 11515093
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  11515051 ctcatttggaggaactaaaaaattgtattggaggagggttttg 11515093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 13018433 - 13018392
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  13018433 gtaatcatatgcattaatttatcattctctaaa-aaactactc 13018392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 16813653 - 16813683
Alignment:
Q  149 aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||||||    
T  16813653 aactaaaaaattgtattggaggagagttttg 16813683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 16852932 - 16852962
Alignment:
Q  149 aactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||||||||    
T  16852932 aactaaaaaattgtattggaggagagttttg 16852962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 26905811 - 26905853
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  26905811 ctcatttggaggaactaaaaaattgtattggaggagggttttg 26905853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 34757612 - 34757654
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  34757612 ctcatttggaggaactaaaaaattgtattggaggagggttttg 34757654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 37194393 - 37194434
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  37194393 gtaatcatatgcattaatttatcattctctaaa-aaactactc 37194434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 43572499 - 43572458
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  43572499 gtaatcatatgcattaatttatcattctctaaa-aaactactc 43572458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 13766012 - 13765971
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| |||||||||||||| |||| ||||||    
T  13766012 ctcatttggggaactcaaaaattgtattgggggagggttttg 13765971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 28539499 - 28539458
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||    
T  28539499 ctcatttgggggactaaaaaattgtattggatgagagctttg 28539458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 37194274 - 37194315
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  37194274 ctcatttggaggaactaaaaaattgtattggaggagggtttt 37194315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 41503281 - 41503322
Alignment:
Q  248 taatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  41503281 taatcataatcattaatttatcattctctaaacaaactactc 41503322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 15555424 - 15555388
Alignment:
Q  134 ccttctcatttgg-ggaactaaaaaattgtattggag 169  Q
    ||||||||||||| |||||||||||||||||||||||    
T  15555424 ccttctcatttggaggaactaaaaaattgtattggag 15555388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 31082927 - 31082959
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaa 279  Q
    ||||||||||||||||||||||||||| |||||    
T  31082927 gtaatcatatgcattaatttatcattctctaaa 31082959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 36870278 - 36870310
Alignment:
Q  145 ggggaactaaaaaattgtattggaggagagttt 177  Q
    |||||||||||||||||||||||||||| ||||    
T  36870278 ggggaactaaaaaattgtattggaggagggttt 36870310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 38293896 - 38293936
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagtttt 178  Q
    ||||||||||||||| |||||||||||||| |||| |||||    
T  38293896 ctcatttggggaactcaaaaattgtattgggggagggtttt 38293936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 30579 - 30621
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  30579 gtaatcatatgcattaatttatcattctctaaaaaaactactc 30621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 37247 - 37289
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  37247 gtaatcatatgcattaatttatcattctctaaaaaaactactc 37289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 151 - 110
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  151 gtaatcatatgcattaatttatcattctctaaa-aaactactc 110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 260 - 228
Alignment:
Q  147 ggaactaaaaaattgtattggaggagagttttg 179  Q
    |||||||||||||||||||||||||| ||||||    
T  260 ggaactaaaaaattgtattggaggagggttttg 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 26506 - 26548
Alignment:
Q  247 gtaatcatatgcattaatttatcattccctaaacaaactactc 289  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||    
T  26506 gtaatcatatgtattaatttatcattctctaaaaaaactactc 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 93580 - 93538
Alignment:
Q  138 ctcatttgg-ggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  93580 ctcatttggaggaactaaaaaattgtattggaggagggttttg 93538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 15925 - 15966
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  15925 ctcatttggggaatttaaaaattgtattggaggagggttttg 15966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 35528 - 35487
Alignment:
Q  138 ctcatttggggaactaaaaaattgtattggaggagagttttg 179  Q
    ||||||||||||||| |||||||||||||| |||| ||||||    
T  35528 ctcatttggggaactcaaaaattgtattgggggagggttttg 35487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University