View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_26 (Length: 412)
Name: NF14177_high_26
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_26 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 320 - 400
Target Start/End: Original strand, 18285485 - 18285565
Alignment:
| Q |
320 |
aatatagatggagcatccaaaggtaaccctgggccttcttcttatggaggggtgtttagagattgtaacgctgacttccta |
400 |
Q |
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| T |
18285485 |
aatatagatggagcatccaaaggtaaccctgggccttcttcttgtggaggggtgtttagagattgtaatgctgacttccta |
18285565 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 2625774 - 2626117
Alignment:
| Q |
24 |
gctggtctcctttgtgtaagttagttgttctctcagccattgtcaattgtttcaatataatttggtactgcaggaataatagcatatttgaagataggaa |
123 |
Q |
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| T |
2625774 |
gctggtctcccctatgcaagttagtggttctctcaggtatcgacaattgtttcaatataatttggtactgtaggaatcaaagaat--ttgaagatagaaa |
2625871 |
T |
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| Q |
124 |
aatcaatcaccgaacaaccattaatctcattattgctaacacctctatgtctgggaattgttcttctttgactgctagatcttctattcatgaatttatg |
223 |
Q |
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| T |
2625872 |
gatcaattacagaactgcaatcaatctcatcatttctgtcacttctatgtcaggaaaatgtgctagactggcttcatgatcctccatccaagattttgtc |
2625971 |
T |
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| Q |
224 |
cttcttaaagctttttcagttactttaaaattgggaaatgctccttctattaaggcggtcatttggcagccccctatttttaattggataaaatgcaata |
323 |
Q |
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| T |
2625972 |
ctccttaaagatttctcgtctagcttaagattgggaaatgctcctaaaattaaggaagtcctttgacagccacctatccttaatttgataaaatgtaata |
2626071 |
T |
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| Q |
324 |
tagatggagcatccaaaggtaaccctgggccttcttcttatggagg |
369 |
Q |
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| T |
2626072 |
tagatggagcttctaaaggtaatcctggtccctcctcttgtggagg |
2626117 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 14810911 - 14811018
Alignment:
| Q |
272 |
attaaggcggtcatttggcagccccctatttttaattggataaaatgcaatatagatggagcatccaaaggtaaccctgggccttcttcttatggagggg |
371 |
Q |
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| T |
14810911 |
attaaggaggttatttggcagcctctagtttttaattggattaagtggaacatagatggagcctccattggtaatcctggtccttcttcttgtggaggga |
14811010 |
T |
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| Q |
372 |
tgtttaga |
379 |
Q |
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| T |
14811011 |
tctttaga |
14811018 |
T |
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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 9220 - 9284
Alignment:
| Q |
287 |
tggcagccccctatttttaattggataaaatgcaatatagatggagcatccaaaggtaaccctgg |
351 |
Q |
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| T |
9220 |
tggcagccccctatccttaactgggtaaaatgtaatatatatggagcttcaaaaggtaaccctgg |
9284 |
T |
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