View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_30 (Length: 363)
Name: NF14177_high_30
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 3573287 - 3573632
Alignment:
| Q |
1 |
gattttgattcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatcttcctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573287 |
gattttgattcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatcttcctc |
3573386 |
T |
|
| Q |
101 |
atagagatcgtccctaccgtcagggtcaactcctttgattgttttgtggttctcagagattagtttgaattgtggattttgtgattttgatttcttgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573387 |
atagagatcgtccctaccgtcagggtcaactcctttgattgttttgtggttctcagagattagtttgaattgtggattttgtgattttgatttcttgaga |
3573486 |
T |
|
| Q |
201 |
tagaatttcatgaaattgggat---aaatgagagtgttccaaggattacttacacatttgaaacgaagaagtgatttcacaggaagtaatgaaaggaact |
297 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573487 |
tagaatttcatgaaattgggatcggaaatgagagtgttccaaggattacttacacatttgaaacgaagaagtgatttcacaggaagtaatgaaaggaact |
3573586 |
T |
|
| Q |
298 |
agtgaggagatcgtcagagaagaaaacggacggcatggttgattgt |
343 |
Q |
| |
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| T |
3573587 |
agtgaggagatcgtcagagaagaaaacggacggcatggttgattgt |
3573632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 3565144 - 3564858
Alignment:
| Q |
3 |
ttttgattcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatcttcctcat |
102 |
Q |
| |
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|||| |||||| | |||||||| |||||| |||| ||||| || |||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
3565144 |
ttttcattcaacatagagtgaggatcagcaacaaccgtaaatgacgggttatcgagtaaacgaggtataggatatggaatgatactgtaatcaatctcag |
3565045 |
T |
|
| Q |
103 |
agagatcgtccctaccgtcagggtcaactcctttgattgttttgtggttctcagagattagtttgaattgtggattttgtgattttgatttcttgagata |
202 |
Q |
| |
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|||||| ||||| | |||| | ||| ||||| |||| ||| | || |||||| |||| | | |||||||||||||||||||| |||||| |
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| T |
3565044 |
cttcatcgtcactaccataaggggaatttcccttgataatttttaggtgatgagttattagtgtgaagtattgattttgtgattttgatttcatgagatg |
3564945 |
T |
|
| Q |
203 |
gaatttcatgaaattgggat---aaatgagagtgttccaaggattacttacacatttgaaacgaagaagtgatttcacaggaagtaa |
286 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3564944 |
gaatttcacaaaattgggatcggaaatgagagtgttccaaggattacttacacatttgaaacgaagaagtgattttacaggaagtaa |
3564858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 1686949 - 1687034
Alignment:
| Q |
9 |
ttcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatc |
94 |
Q |
| |
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|||||||||||||||| |||||| |||||||||| ||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
1686949 |
ttcaatagagagtgaggatcagcaacaagggtaatcgacaggttatcgagtaaacaagatataggatatggaatgaaactgtaatc |
1687034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 294
Target Start/End: Complemental strand, 3557126 - 3556832
Alignment:
| Q |
3 |
ttttgattcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatcttcctcat |
102 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| || ||||||||| || |||||||| |||||||| | |||||| ||||||||||||| |||||| |||| |
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| T |
3557126 |
ttttcattcaatagagagcgaggatcagtgataagggtaaaggacgggttatcgagtaaacggggtatagggtatggaatgataccgtaatcagtctcag |
3557027 |
T |
|
| Q |
103 |
agagatcgtccctaccgtcagggtcaactcctttgattgttttgtggttctcagagattagtttgaattgtggattttgtgattttgatttcttgagata |
202 |
Q |
| |
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| || ||| || |||| |||| |||| | || |||||| || | || || |||| |||| || ||||||||||||||||| ||||||||| |
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| T |
3557026 |
attcatagtcacttccgtaaggggattctcccataatagttttgatgtatttagtgactagtgtgaagagttgattttgtgattttgatctcttgagatg |
3556927 |
T |
|
| Q |
203 |
gaatttcatgaaattgggat---aaatgagagtgttccaaggattacttacacatttgaaacgaagaagtgatttcacaggaagtaatgaaagga |
294 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||||||| |||||||| ||| | || ||||| || |||||||||| |||||||||||||| |
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| T |
3556926 |
gaatttcacaaaattgggatcagaaattagagcgttccaagacttacttacgcatctaaatcgaagtagagatttcacagaaagtaatgaaagga |
3556832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 321
Target Start/End: Original strand, 1687154 - 1687304
Alignment:
| Q |
175 |
gattttgtgattttgatttcttgagatagaatttcatgaaattgggat---aaatgagagtgttccaaggattacttacacatttgaaacgaagaagtga |
271 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||| ||||| |||| |||| |||||||| |||||||| ||| |||| ||||| || || |
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| T |
1687154 |
gattttgtgattttgatctcttgagatggaatttcacaaaaaagggatcagaaattagagcgttccaagacttacttacgcatctgaatcgaaggagaga |
1687253 |
T |
|
| Q |
272 |
tttcacaggaagtaatgaaaggaactag-tgaggagatcgtcagagaagaa |
321 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||||||| ||||||||||| |
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|
| T |
1687254 |
tttcacagaaagtaatgaaaggatctcgacgaggagatcatcagagaagaa |
1687304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 39379744 - 39379828
Alignment:
| Q |
10 |
tcaatagagagtgagaatcagcgacaagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatactgtaatc |
94 |
Q |
| |
|
|||||||| |||||| |||||| ||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||| |
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| T |
39379744 |
tcaatagaaagtgaggatcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatactgtaatc |
39379828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 318
Target Start/End: Original strand, 39379862 - 39380014
Alignment:
| Q |
170 |
ttgtggattttgtgattttgatttcttgagatagaatttcatgaaattgggat---aaatgagagtgttccaaggattacttacacatttgaaacgaaga |
266 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||| | |||||||||| |||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
39379862 |
ttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagt |
39379961 |
T |
|
| Q |
267 |
agtgatttcacaggaagtaatgaaaggaact-agtgaggagatcgtcagagaa |
318 |
Q |
| |
|
|| ||||| ||||||||||| ||||||| || ||||| |||||||| ||||| |
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|
| T |
39379962 |
agagattttacaggaagtaacgaaaggatctcggtgagaagatcgtcggagaa |
39380014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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