View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_32 (Length: 362)
Name: NF14177_high_32
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 345
Target Start/End: Complemental strand, 45074691 - 45074347
Alignment:
| Q |
4 |
agaggagtagcataggcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagnnnnnnngaga-------ggggatgtcaaccattcatga |
96 |
Q |
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|||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
45074691 |
agaggaataacataagcttaacttcgaagttgatgtcaaggtgtagcatttttactttgagaaaaaaaaaaaaaaaaaaggggatgtcaaccattcatga |
45074592 |
T |
|
| Q |
97 |
ggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtcaaatttttgcgtggaaataatat |
196 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45074591 |
ggaaagtaattgtaagcattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgccaaatttttgcgtggaaataatat |
45074492 |
T |
|
| Q |
197 |
tcacatcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtgacttgaacaaagtgtggctggccatttataa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074491 |
tcacatcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtgacttgaacaaagtgtggctggccatttataa |
45074392 |
T |
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| Q |
297 |
atggatggattattgttagtcattgtgtttaaatagatgactatggcag |
345 |
Q |
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| T |
45074391 |
at----ggattattgttagtcattgtgtttaaatagatgactatggcag |
45074347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 75 - 339
Target Start/End: Original strand, 27366431 - 27366691
Alignment:
| Q |
75 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
174 |
Q |
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| T |
27366431 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27366530 |
T |
|
| Q |
175 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtgacttgaaca |
274 |
Q |
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| T |
27366531 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttctttttagttgatttttgtttaaaagtgacttgaaca |
27366630 |
T |
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| Q |
275 |
aagtgtggctggccatttataaatggatggattattgttagtcattgtgtttaaatagatgacta |
339 |
Q |
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| T |
27366631 |
aagtgtggctggccatttataa----atggattattgctagtcattgtgtttaaatagatgacta |
27366691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 75 - 339
Target Start/End: Original strand, 27456778 - 27457038
Alignment:
| Q |
75 |
aggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgtca |
174 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27456778 |
aggggatgtcaaccattcatgaggaaagtaatggtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatgcca |
27456877 |
T |
|
| Q |
175 |
aatttttgcgtggaaataatattcacatcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtgacttgaaca |
274 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27456878 |
aatttttgcgtggaaataatattcacagcatgccatgtactccctttcattgatgaccgtgttctttttagttgatttttgtttaaaagtgacttgaaca |
27456977 |
T |
|
| Q |
275 |
aagtgtggctggccatttataaatggatggattattgttagtcattgtgtttaaatagatgacta |
339 |
Q |
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| T |
27456978 |
aagtgtggctggccatttataa----atggattattgctagtcattgtgtttaaatagatgacta |
27457038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27366336 - 27366380
Alignment:
| Q |
4 |
agaggagtagcataggcttaacttcgaagttgatgtcaaggtgta |
48 |
Q |
| |
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|||||| || |||| |||||||||||||||| ||||||||||||| |
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| T |
27366336 |
agaggaatatcataagcttaacttcgaagttaatgtcaaggtgta |
27366380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27456683 - 27456727
Alignment:
| Q |
4 |
agaggagtagcataggcttaacttcgaagttgatgtcaaggtgta |
48 |
Q |
| |
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|||||| || |||| |||||||||||||||| ||||||||||||| |
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| T |
27456683 |
agaggaatatcataagcttaacttcgaagttaatgtcaaggtgta |
27456727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 72 - 303
Target Start/End: Complemental strand, 23121307 - 23121078
Alignment:
| Q |
72 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatg |
171 |
Q |
| |
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|||||||||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
23121307 |
gagaggggatgttaaccattcgtgaggaaaataattgtagtcattaggcaaaaccaaattttatcacatttttgaaagtaaaataattgggattgttatg |
23121208 |
T |
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| Q |
172 |
tcaaatttt--tgcgtggaaataatattca-catcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtgact |
268 |
Q |
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|| |||| || || ||||||||||||| | ||||| ||||| |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
23121207 |
ctaattttttatgtgtagaaataatattcatcgtcatgtcatgtgctccctttaattgatg----tgttctttttagttgatttttgttt-aaagtgact |
23121113 |
T |
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| Q |
269 |
tgaacaaagtgtggctggccatttataaatggatg |
303 |
Q |
| |
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|||||||||||||| |||||||| |||||| |||| |
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| T |
23121112 |
tgaacaaagtgtggttggccattaataaatagatg |
23121078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 298
Target Start/End: Original strand, 22631218 - 22631444
Alignment:
| Q |
72 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcac-attttacaaagta-aaataatagggattgtta |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||| || || ||| ||||||| |||||||||| |
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| T |
22631218 |
gagaggggatgtcaaccattcatgaggaaaataattgtagtcattaggcaaaatcaaattttatcacaatattgatgtgtagaaataattgggattgtta |
22631317 |
T |
|
| Q |
170 |
tgtcaaatttttgcgtg--gaaataatattc-acatcatgccatgtactccctttcattgatgaccatgttctttttagttgatttttatttaaaagtga |
266 |
Q |
| |
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|| || |||||| ||| |||||||||||| ||||| ||||| |||||||| ||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
22631318 |
tgctaattttttgtgtgtagaaataatattcggtgtcatgtcatgtgctccctttaattgatg----tgttctttttagttgatttttgttt-aaagtga |
22631412 |
T |
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| Q |
267 |
cttgaacaaagtgtggctggccatttataaat |
298 |
Q |
| |
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|||||||||||||||| |||||||| |||||| |
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| T |
22631413 |
cttgaacaaagtgtggttggccattaataaat |
22631444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 51093892 - 51093991
Alignment:
| Q |
72 |
gagaggggatgtcaaccattcatgaggaaagtaattgtagacattacgcaaaaccaaattttatcacattttacaaagtaaaataatagggattgttatg |
171 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||| ||||| | | ||||||| |||||||||||| |||| | ||||||| || |||| |||| |
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| T |
51093892 |
gagaggggatgtcaaccattcatgaggaaagttacggtagtcattaggatacaccaaatattatcacatttttcaaaattaaataattggaattgatatg |
51093991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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