View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_53 (Length: 292)
Name: NF14177_high_53
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 42551691 - 42551611
Alignment:
| Q |
15 |
acttgctgataatggttttggcactttgtacttctctcaccgaagagtagaagagctcatcctcaccaatgaagtccttat |
95 |
Q |
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| T |
42551691 |
acttgctgataatggttttgacactttgtacttctctcactgaagagtagaagagctcatcctcaccaatgaagtccttat |
42551611 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 42551616 - 42551554
Alignment:
| Q |
231 |
ccttatccccagctgaaagtaaaacaaagaccagactttaaataatactcga-gacatgggaa |
292 |
Q |
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| T |
42551616 |
ccttatccccagctgaaagtaaaacaaagaccatactttaaataatactcgaggacatgggaa |
42551554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 8673953 - 8673897
Alignment:
| Q |
212 |
ttagaaggcctgaggagaaccttatccccagctgaaagtaaaacaaagaccagactt |
268 |
Q |
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| T |
8673953 |
ttagaaggcttgatgagaacctgatctccagctgaaagtaaaacaaataccagactt |
8673897 |
T |
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