View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_55 (Length: 288)
Name: NF14177_high_55
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 5985163 - 5985278
Alignment:
| Q |
19 |
aggtgagtttggtcacaaaattcatttagttctgtaatgaatttttctttatagtatggttttacttttattgtttgtaatggtatcagagttctaatat |
118 |
Q |
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| T |
5985163 |
aggtgagtttggtcacaaaattcatttagttctgtaatgaatttttctttatagtatggttttacttttattttttgtaatggtatcagagttctaatat |
5985262 |
T |
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| Q |
119 |
acttatctttccctta |
134 |
Q |
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|||||||||||||||| |
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| T |
5985263 |
acttatctttccctta |
5985278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 5985293 - 5985394
Alignment:
| Q |
177 |
attaattaacgaaaaaataattattaattaagcattttcttttccgtcagggatcgatacaacatagcaactaaaatcgacaagattttggctgtcccta |
276 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
5985293 |
attaactaacgaaaaaataattattaattaagcattttcttttccgtcagggatcgatacaacatagcaactaaaaccgacaagattttggctgtcctta |
5985392 |
T |
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| Q |
277 |
tg |
278 |
Q |
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|| |
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| T |
5985393 |
tg |
5985394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 5965010 - 5965085
Alignment:
| Q |
203 |
attaagcattttcttttccgtcagggatcgatacaacatagcaactaaaatcgacaagattttggctgtccctatg |
278 |
Q |
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| T |
5965010 |
attaagcattttcttttcctacagggatcgatacaacatagcaactaaaaaagacaagattatgtctgtccttatg |
5965085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 5969218 - 5969267
Alignment:
| Q |
203 |
attaagcattttcttttccgtcagggatcgatacaacatagcaactaaaa |
252 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5969218 |
attaagcattttcttttcctgtagggatcgatacaacatagcaactaaaa |
5969267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 8714929 - 8714880
Alignment:
| Q |
203 |
attaagcattttcttttccgtcagggatcgatacaacatagcaactaaaa |
252 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8714929 |
attaagcattttcttttcctgtagggatcgatacaacatagcaactaaaa |
8714880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 5935829 - 5935890
Alignment:
| Q |
205 |
taagcattttcttttccgtcagggatcgatacaacatagcaactaaaatcgacaagattttg |
266 |
Q |
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| T |
5935829 |
taagccttttcttttcttacagggatcgacacaacatagcaaccaaaacggacaagattttg |
5935890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5969154 - 5969190
Alignment:
| Q |
19 |
aggtgagtttggtcacaaaattcatttagttctgtaa |
55 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
5969154 |
aggtgagtttggtcactgaattcatttagttctgtaa |
5969190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 8714993 - 8714957
Alignment:
| Q |
19 |
aggtgagtttggtcacaaaattcatttagttctgtaa |
55 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
8714993 |
aggtgagtttggtcactgaattcatttagttctgtaa |
8714957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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