View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_58 (Length: 256)
Name: NF14177_high_58
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29330719 - 29330476
Alignment:
| Q |
1 |
aaacagttggatccatgagaacagtaagacatttgcatcagttcagaaatattgaatgattaatttcagtttgtattttttacctttaattttgaaaatt |
100 |
Q |
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| T |
29330719 |
aaacagttggatccatgagaacagtaagaaatttgcatcagttcagaaatattgaatgattaatttcagtttgtattttttacctttaattttgaaaatt |
29330620 |
T |
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| Q |
101 |
catcaggttgcatcttttactggtgagtaaaaagccatagagaagtataatagcaagataaaaattgcttatactgcaatggttcaacaaagcatagcat |
200 |
Q |
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| T |
29330619 |
catcaggttgcatcttttactggtgagaaaaaagccatagagaagtataatagcaagataaaaattgcttatactgcaatggttcaacaaagcatagcat |
29330520 |
T |
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| Q |
201 |
cagggataggaatgggaacgcttctccttattatcttcttctct |
244 |
Q |
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| T |
29330519 |
cagggataggaatgggaacgcttctccttattatcttctgctct |
29330476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5833217 - 5832985
Alignment:
| Q |
1 |
aaacagttggatccatgagaacagtaagacatttgcatcagttcagaaatattgaatgattaatttcagtttgtatttttta-----------cctttaa |
89 |
Q |
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| T |
5833217 |
aaacagttggagccatcagaacagtaagacacttgcctcaattcagaaatactgaataattaattcgagtttgtaattattcattgtctttgtcctttaa |
5833118 |
T |
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| Q |
90 |
ttttgaaaattcatcaggttgcatcttttactggtgagtaaaaagccatagagaagtataatagcaagataaaaattgcttatactgcaatggttcaaca |
189 |
Q |
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| T |
5833117 |
ttt-gaaaaatgatcaggttgcatcttttactggtgagaaaaaagccatagagaagtataatagcaagataaaaattgcttatactacaatggttaaaca |
5833019 |
T |
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| Q |
190 |
aagcatagcatcagggataggaatgggaacgctt |
223 |
Q |
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| T |
5833018 |
aggcatagtctcagggtttggaatcggaatgctt |
5832985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 5764714 - 5764825
Alignment:
| Q |
105 |
aggttgcatcttttactggtgagtaaaaagccatagagaagtataatagcaagataaaaattgcttatactgcaatggttcaacaaagcatagcatcagg |
204 |
Q |
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|||||||||||||||| || ||| ||||||| || || || || ||||| ||| ||||| ||||||||||| ||| ||||||||| | || || || || |
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| T |
5764714 |
aggttgcatcttttaccggggagaaaaaagcaattgaaaattacaatagtaagttaaaagttgcttatactacaacagttcaacaaggaattgcctcggg |
5764813 |
T |
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| Q |
205 |
gataggaatggg |
216 |
Q |
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| T |
5764814 |
gttaggaatggg |
5764825 |
T |
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