View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_63 (Length: 246)

Name: NF14177_high_63
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_63
NF14177_high_63
[»] chr5 (2 HSPs)
chr5 (10-230)||(40525992-40526212)
chr5 (128-226)||(33023553-33023650)
[»] chr6 (1 HSPs)
chr6 (10-230)||(14550909-14551127)
[»] chr4 (8 HSPs)
chr4 (16-230)||(20248748-20248961)
chr4 (10-230)||(42674798-42675017)
chr4 (13-61)||(1038976-1039024)
chr4 (114-214)||(42766165-42766264)
chr4 (48-225)||(18740299-18740475)
chr4 (185-230)||(35376113-35376158)
chr4 (170-222)||(7446384-7446436)
chr4 (170-222)||(10009653-10009705)
[»] chr8 (1 HSPs)
chr8 (41-230)||(2959360-2959554)
[»] chr1 (4 HSPs)
chr1 (109-230)||(22816518-22816637)
chr1 (10-115)||(22816387-22816492)
chr1 (118-208)||(20417613-20417702)
chr1 (117-214)||(38029780-38029876)
[»] chr2 (5 HSPs)
chr2 (49-229)||(16203008-16203188)
chr2 (119-229)||(17566590-17566699)
chr2 (119-201)||(29870682-29870763)
chr2 (131-217)||(17926978-17927063)
chr2 (101-189)||(32598748-32598835)
[»] chr3 (5 HSPs)
chr3 (159-212)||(37835777-37835829)
chr3 (81-212)||(29000211-29000341)
chr3 (10-98)||(30819088-30819176)
chr3 (170-222)||(15372345-15372397)
chr3 (170-222)||(19653221-19653273)
[»] scaffold0394 (1 HSPs)
scaffold0394 (170-222)||(5251-5303)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 40526212 - 40525992
Alignment:
Q  10 acaaacaaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaa 109  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40526212 acaaacaaaactaagatatattatcaaaaagggagagctctactctctagcacaaggtgtgcaaagaagagcaaagcaaaatacagcaacatatcctaaa 40526113  T
Q  110 tatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaa 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  40526112 tatatacaaaaaagacaatcaaccaatgcctaaaaagacaagaggttgatgccaccacataatgataaccaaaaagaaaacatacatttttagctttcaa 40526013  T
Q  210 ccaatgtagagaagtaatttt 230  Q
    |||||||||||||||||||||    
T  40526012 ccaatgtagagaagtaatttt 40525992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 33023650 - 33023553
Alignment:
Q  128 tcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaagtaa 226  Q
    |||||||||||| ||| |||||||||||| ||||| ||||||| ||||||| |||| ||||||| | |||||||||||||| |||||||| || |||||    
T  33023650 tcaaccaatgcccaaacagacaagaggttgatgccgccacata-tgataaccaaaaggaaaacacacatttttagctttcagccaatgtaaagtagtaa 33023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 14550909 - 14551127
Alignment:
Q  10 acaaacaaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaa 109  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||| |||  |||||| ||    
T  14550909 acaaacaaaaatgagatatattaccataaagggagggctctactctttagcacaagatgtgcaaagaagagcaaagcaaaatacaacaaagtatcctgaa 14551008  T
Q  110 tatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaa 209  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||  || |||||||| ||||| || |||||||||||| | |||||||||||| |     
T  14551009 tatatacaaaaaagacagtcaaccaatgcctaaacagacaagaggttgttgtcaccacat-atgat-accaaaaagaaaacaaacatttttagcttttag 14551106  T
Q  210 ccaatgtagagaagtaatttt 230  Q
    ||| | |||| ||||||||||    
T  14551107 ccactatagataagtaatttt 14551127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 20248961 - 20248748
Alignment:
Q  16 aaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaatatata 115  Q
    |||||| |||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||  |||| | ||||||||    
T  20248961 aaaaatgagatatatcaccacaaagtgagagctctactctctagcacaaggcgtgcaaagaagagcaaagcaaaatacagtaaagtatcttgaatatata 20248862  T
Q  116 caaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatg 215  Q
    |||||||||||||||| ||||||||||| ||||||||||||  ||||||||||| ||| |||| |||| ||||| | | |||||||||||||| ||| ||    
T  20248861 caaaaaagacaatcaatcaatgcctaaatagacaagaggttgttgccaccacat-atggtaaccaaaaggaaaatagacatttttagctttcagccactg 20248763  T
Q  216 tagagaagtaatttt 230  Q
     ||||||||||||||    
T  20248762 aagagaagtaatttt 20248748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 42674798 - 42675017
Alignment:
Q  10 acaaacaaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaa 109  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||| | |||||||| | ||| |||||| ||||||||||||||||||  |||| | ||    
T  42674798 acaaacaaaaatgagatacattaccacaaagggagagctctactctttggcacaaggcgcgcatagaagagcaaagcaaaatacagcaaagtatcttgaa 42674897  T
Q  110 tatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaa 209  Q
    ||||||||||||||||| |||| ||||| ||||| ||| ||||||||  ||||||||||| |||||||| |||| |||| |||  |||||||||||| |     
T  42674898 tatatacaaaaaagacagtcaatcaatgtctaaatagataagaggttgctgccaccacat-atgataaccaaaaggaaatcattcatttttagcttttag 42674996  T
Q  210 ccaatgtagagaagtaatttt 230  Q
    ||| ||||| |||||||||||    
T  42674997 ccactgtagtgaagtaatttt 42675017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1038976 - 1039024
Alignment:
Q  13 aacaaaaataagatatattaccaaaaagggagagctctactctctagca 61  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  1038976 aacaaaaatgagatatattaccacaaagggagagctctactctctagca 1039024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 42766165 - 42766264
Alignment:
Q  114 tacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaa 213  Q
    |||||||||||| ||||||||||||| |||  ||||||| |||  |||||||||| |||| |||| ||||  |||||| |||||||||||||||| ||||    
T  42766165 tacaaaaaagaccatcaaccaatgcccaaactgacaagaagttgctgccaccaca-aatggtaaccaaaagtaaaacaaatatttttagctttcagccaa 42766263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 18740475 - 18740299
Alignment:
Q  48 tctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaatatatacaaaaaagacaatcaaccaatgcctaaagaga 147  Q
    |||||||||||| ||||| ||||||||||||| || | |||| |||| |||| ||  || || | |||||||||||| | ||||| |||| | ||| |||    
T  18740475 tctactctctagtacaagatgtgcaaagaagagcacaacaaagtacatcaacttaatctgaagaaatacaaaaaagaaagtcaactaatggccaaacaga 18740376  T
Q  148 caagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaagta 225  Q
     ||| ||||  ||||||||| | ||| | || ||||  |||||| | |||||||||||||| ||| || || ||||||    
T  18740375 taagtggttgctgccaccacgt-atggttaccaaaagtaaaacaaacatttttagctttcagccactgaagtgaagta 18740299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 35376158 - 35376113
Alignment:
Q  185 gaaaacatatatttttagctttcaaccaatgtagagaagtaatttt 230  Q
    ||||||| | |||||||||||||||||||| || ||||||||||||    
T  35376158 gaaaacagacatttttagctttcaaccaatttaaagaagtaatttt 35376113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 7446384 - 7446436
Alignment:
Q  170 aatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaa 222  Q
    ||||||||| |||| |||| || ||||||||||||||||||||| | ||||||    
T  7446384 aatgataaccaaaaggaaagcacatatttttagctttcaaccaacgaagagaa 7446436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 10009705 - 10009653
Alignment:
Q  170 aatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaa 222  Q
    ||||||||| |||| ||||||| | ||||||||||||||||||| | ||||||    
T  10009705 aatgataaccaaaaggaaaacacacatttttagctttcaaccaacgaagagaa 10009653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 230
Target Start/End: Original strand, 2959360 - 2959554
Alignment:
Q  41 ggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaatatatacaaaaaagacaatcaaccaatgcct 140  Q
    ||||||||||||||||||| |||| | |||||||||||| |||||||||||| |||||  ||| || ||||||||||||||||||| ||||||||| |||    
T  2959360 ggagagctctactctctagtacaaagcgtgcaaagaagagcaaagcaaaatatagcaaagtattctgaatatatacaaaaaagacactcaaccaattcct 2959459  T
Q  141 aaagagac-aagaggttaatgccaccacataatgataacaaaaaag-----aaaacatatatttttagctttcaaccaatgtagagaagtaatttt 230  Q
    ||| |||| ||||||||  ||||||||||| ||| |||| |||| |     |||||||| | |||||||||||||||| |||||||||||||||||    
T  2959460 aaacagacaaagaggttgctgccaccacat-atggtaaccaaaaggaaattaaaacatacacttttagctttcaaccactgtagagaagtaatttt 2959554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 22816518 - 22816637
Alignment:
Q  109 atatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttca 208  Q
    ||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||| |||| ||||| ||| ||||||||||||||    
T  22816518 atatatataaaaaagacagtcaaccaatgcctaaacagacaagaggttgatgccaccacat-atgataaccaaaaggaaaatatacatttttagctttca 22816616  T
Q  209 accaatgtagagaagtaatttt 230  Q
     || |||  |||||||||||||    
T  22816617 gcc-atgctgagaagtaatttt 22816637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 22816387 - 22816492
Alignment:
Q  10 acaaacaaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaa 109  Q
    |||||||||||| ||||||| |||||  |||| |||||||||||||||||||||| | ||| |||||||| |||||||||||||| |||  |||| | ||    
T  22816387 acaaacaaaaatgagatataataccattaaggaagagctctactctctagcacaaagcgtgtaaagaagatcaaagcaaaatacaacaaagtatcttgaa 22816486  T
Q  110 tatata 115  Q
    ||||||    
T  22816487 tatata 22816492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 20417702 - 20417613
Alignment:
Q  118 aaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttca 208  Q
    ||||||||| ||||||| |||||||| ||||||||||||  |||||| ||| |||| |||| |||| ||||||| | ||||||||||||||    
T  20417702 aaaaagacagtcaaccagtgcctaaacagacaagaggttgttgccactaca-aatggtaactaaaaggaaaacaaacatttttagctttca 20417613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 38029876 - 38029780
Alignment:
Q  117 aaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaat 214  Q
    |||||||||| |||||||||||| ||| |  |||||||||  |||||||||| |||| |||| |||| ||||||| |  ||||| ||||||| |||||    
T  38029876 aaaaaagacagtcaaccaatgcccaaacatgcaagaggttgctgccaccaca-aatggtaaccaaaaggaaaacaaacttttttggctttcagccaat 38029780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 16203188 - 16203008
Alignment:
Q  49 ctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaacatatcctaaata--tatacaaaaaagacaatcaaccaatgcctaaagag 146  Q
    ||||| ||||||||||||||||||||| ||| || | |||||| |  ||   |||||| ||||  |||| |||||| ||| |||||||||||| ||| ||    
T  16203188 ctactatctagcacaaggtgtgcaaagtagagcagaacaaaattctacacagtatcctgaataattatagaaaaaa-acagtcaaccaatgcccaaacag 16203090  T
Q  147 acaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaagtaattt 229  Q
    ||||||||||  || ||||||||| ||||||| |||| ||||||||| |||||||||||||| |||||||| || ||||||||    
T  16203089 acaagaggttgctgtcaccacata-tgataaccaaaaggaaaacatacatttttagctttcagccaatgtaaagtagtaattt 16203008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 17566699 - 17566590
Alignment:
Q  119 aaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtag 218  Q
    |||| ||| |||||||||| ||||| ||||||||||||  ||||| |||||| || |||| |||||  ||||  | |||||||||||||||||||||||     
T  17566699 aaaaaacagtcaaccaatgtctaaacagacaagaggttgctgccatcacata-tggtaaccaaaaaagaaacgcacatttttagctttcaaccaatgtaa 17566601  T
Q  219 agaagtaattt 229  Q
    || ||||||||    
T  17566600 agtagtaattt 17566590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 29870682 - 29870763
Alignment:
Q  119 aaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatattttta 201  Q
    |||||||| |||||||||||| ||| ||||||||||||  ||||||||||| |||||||| |||| ||||||| | |||||||    
T  29870682 aaaagacagtcaaccaatgcccaaatagacaagaggttgctgccaccacat-atgataaccaaaacgaaaacaaacattttta 29870763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 17926978 - 17927063
Alignment:
Q  131 accaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaaccaatgta 217  Q
    ||||||||| ||| ||||||||||||  ||||||||||| ||| || | |||| ||||| | | |||||||||||||| ||||||||    
T  17926978 accaatgcccaaacagacaagaggttgctgccaccacat-atggtacctaaaaggaaaatacacatttttagctttcagccaatgta 17927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 32598748 - 32598835
Alignment:
Q  101 tatcctaaatatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaaaaaagaaaa 189  Q
    |||||||||||| ||||||||||||| |||||| ||||| ||| |   ||| ||||  |||||||||| ||||||||| |||| |||||    
T  32598748 tatcctaaatatttacaaaaaagacagtcaaccgatgcccaaacaagtaaggggttgctgccaccaca-aatgataaccaaaaggaaaa 32598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 37835829 - 37835777
Alignment:
Q  159 tgccaccacataatgataacaaaaaagaaaacatatatttttagctttcaacca 212  Q
    |||||||||||| |||| || |||||||||||||||||||||||||||||||||    
T  37835829 tgccaccacata-tgatgaccaaaaagaaaacatatatttttagctttcaacca 37835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 29000211 - 29000341
Alignment:
Q  81 caaagcaaaatacagcaacatatcctaaatatatacaaaaaagacaatcaaccaatgcctaaagagacaagaggttaatgccaccacataatgataacaa 180  Q
    |||| ||||||||| ||| ||||| | || | |||| ||||| ||| ||||||||||||||||  ||| |||||||  || || |||||  ||||||| |    
T  29000211 caaaacaaaatacaacaaaatatcttgaacaaataccaaaaatacagtcaaccaatgcctaaactgacgagaggttgctgtcatcacatt-tgataacca 29000309  T
Q  181 aaaagaaaacatatatttttagctttcaacca 212  Q
    |||  |||||| ||||||||||||||||||||    
T  29000310 aaagaaaaacagatatttttagctttcaacca 29000341  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 30819088 - 30819176
Alignment:
Q  10 acaaacaaaaataagatatattaccaaaaagggagagctctactctctagcacaaggtgtgcaaagaagaacaaagcaaaatacagcaa 98  Q
    |||||||||||| |||||||||| || ||||  | || ||||||||||| |||||| |||||| |||| | || | |||||||||||||    
T  30819088 acaaacaaaaatgagatatattatcacaaagaaaaagatctactctctatcacaagatgtgcatagaatagcagaccaaaatacagcaa 30819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 15372397 - 15372345
Alignment:
Q  170 aatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaa 222  Q
    ||||||||| |||| |||| || | ||||||||||||||||||||| ||||||    
T  15372397 aatgataaccaaaaggaaagcacacatttttagctttcaaccaatgaagagaa 15372345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 19653273 - 19653221
Alignment:
Q  170 aatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaa 222  Q
    ||||||||| |||| |||| || | ||||||||||||||||||||| ||||||    
T  19653273 aatgataaccaaaaggaaagcacacatttttagctttcaaccaatgaagagaa 19653221  T

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Target: scaffold0394 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 5303 - 5251
Alignment:
Q  170 aatgataacaaaaaagaaaacatatatttttagctttcaaccaatgtagagaa 222  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| | ||||||    
T  5303 aatgataaccaaaaggaaaacatacatttttagctttcaaccaacgaagagaa 5251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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