View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_65 (Length: 228)

Name: NF14177_high_65
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_65
NF14177_high_65
[»] chr4 (3 HSPs)
chr4 (1-73)||(19422677-19422748)
chr4 (1-44)||(19429957-19430000)
chr4 (112-180)||(35743318-35743386)
[»] chr3 (1 HSPs)
chr3 (110-152)||(36189706-36189748)
[»] chr1 (1 HSPs)
chr1 (110-146)||(44928142-44928178)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19422748 - 19422677
Alignment:
Q  1 tattcactccaggtcctgtgatgtcaggctgcattgtttgataagcaaaaatatatttaaatataagtatagg 73  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||| ||||||||    
T  19422748 tattcactccaggtcctgtgatgtcaggctgcatttttttataagcaaaaa-atatttacatattagtatagg 19422677  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19430000 - 19429957
Alignment:
Q  1 tattcactccaggtcctgtgatgtcaggctgcattgtttgataa 44  Q
    |||| |||||||||||||| |||||||||||||||||| |||||    
T  19430000 tatttactccaggtcctgttatgtcaggctgcattgttggataa 19429957  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 35743386 - 35743318
Alignment:
Q  112 tataagcacttgtgagattatttggaagaacttatggcttgtttgtatgttgttttcaacttatttcca 180  Q
    |||||||| |||||||| | ||| ||||| |||||| | ||||| || ||||||| |||||||||||||    
T  35743386 tataagcatttgtgagactgtttagaagagcttatgacatgtttataagttgtttccaacttatttcca 35743318  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 36189748 - 36189706
Alignment:
Q  110 agtataagcacttgtgagattatttggaagaacttatggcttg 152  Q
    ||||||||||||||||||| | |||||| ||||||||||||||    
T  36189748 agtataagcacttgtgagactgtttggaggaacttatggcttg 36189706  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 44928142 - 44928178
Alignment:
Q  110 agtataagcacttgtgagattatttggaagaacttat 146  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  44928142 agtataagcacttgtaagattgtttggaagaacttat 44928178  T

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