View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_high_69 (Length: 212)
Name: NF14177_high_69
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 2432037 - 2432219
Alignment:
| Q |
15 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
114 |
Q |
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| T |
2432037 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
2432136 |
T |
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| Q |
115 |
actggaactattatcaacctcactcatgaaattttatctacgcaatatatataacatcatttatagggcaacttttggtgataaatg |
201 |
Q |
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| T |
2432137 |
actggaactattatcaacctcactcatgaaattttatctatgca----atataacatcatttctagggcaacttttggtgataaatg |
2432219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 41623789 - 41623607
Alignment:
| Q |
15 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
114 |
Q |
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| T |
41623789 |
aatatgcacattggagttgttgagtgctaaacgtgcgaaatcattccaatcaattcgagaggaagagttgtcaaaattaattagatatatttctataaac |
41623690 |
T |
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| Q |
115 |
actggaactattatcaacctcactcatgaaattttatctacgcaatatatataacatcatttatagggcaacttttggtgataaatg |
201 |
Q |
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| T |
41623689 |
actggatctactatcaaccttacagatgaaatatcatctatg----acatataacatcatttcaagggcaacttttggtgataaatg |
41623607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 41653219 - 41653357
Alignment:
| Q |
15 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
114 |
Q |
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| T |
41653219 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcataccaatcaattcgagaggaagaggtgtcgaaattaattagatatatttctattaac |
41653318 |
T |
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| Q |
115 |
actggaactattatcaacctcactcatgaaattttatct |
153 |
Q |
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| T |
41653319 |
actggatctaccatcaaccttacagatgaaattttatct |
41653357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 41646012 - 41646117
Alignment:
| Q |
10 |
cgaagaatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttcta |
109 |
Q |
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|||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| | |||||| |
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| T |
41646012 |
cgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
41646111 |
T |
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| Q |
110 |
taaaca |
115 |
Q |
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|||||| |
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| T |
41646112 |
taaaca |
41646117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 41463649 - 41463715
Alignment:
| Q |
43 |
aaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttcta |
109 |
Q |
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| T |
41463649 |
aaacgtgtgagatcattccaatcaattagagaagaagaggtatcaaatttaataaaatgtatttcta |
41463715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 12439445 - 12439311
Alignment:
| Q |
19 |
tgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaacactg |
118 |
Q |
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| T |
12439445 |
tgcacattggagctgttgagtacgaaccgtgtgagatcattccaatcaattaggaaggaagaggtgtcaaattttattaaaaatatttcttcaaacactg |
12439346 |
T |
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| Q |
119 |
gaactattatcaacctcactcatgaaattttatct |
153 |
Q |
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|| ||| |||||||||| |||||||||||||||| |
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| T |
12439345 |
gatctaaaatcaacctcagtcatgaaattttatct |
12439311 |
T |
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