View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_high_71 (Length: 203)

Name: NF14177_high_71
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_high_71
NF14177_high_71
[»] chr7 (20 HSPs)
chr7 (105-203)||(7482259-7482357)
chr7 (105-203)||(38063911-38064009)
chr7 (105-203)||(1738445-1738543)
chr7 (105-203)||(7240783-7240881)
chr7 (106-203)||(9268790-9268887)
chr7 (117-202)||(38441495-38441580)
chr7 (107-203)||(46840894-46840990)
chr7 (123-203)||(1565745-1565825)
chr7 (107-203)||(22285733-22285829)
chr7 (107-203)||(23314139-23314235)
chr7 (123-203)||(31319415-31319495)
chr7 (115-203)||(36016204-36016292)
chr7 (117-203)||(33418410-33418496)
chr7 (105-203)||(36583429-36583527)
chr7 (123-203)||(94334-94414)
chr7 (106-203)||(28536750-28536847)
chr7 (117-203)||(4790282-4790368)
chr7 (117-203)||(7269415-7269501)
chr7 (117-203)||(9575443-9575529)
chr7 (117-199)||(40840129-40840211)
[»] chr2 (23 HSPs)
chr2 (106-203)||(44397581-44397678)
chr2 (104-203)||(3055592-3055691)
chr2 (100-203)||(15896876-15896979)
chr2 (104-203)||(37990010-37990109)
chr2 (105-203)||(37666608-37666706)
chr2 (105-203)||(41478637-41478735)
chr2 (106-203)||(44398720-44398817)
chr2 (107-203)||(13197710-13197806)
chr2 (107-203)||(16044317-16044413)
chr2 (105-203)||(9047753-9047851)
chr2 (117-203)||(16243793-16243879)
chr2 (106-203)||(38917521-38917618)
chr2 (107-203)||(12337937-12338033)
chr2 (107-203)||(15372260-15372356)
chr2 (105-203)||(6648517-6648615)
chr2 (105-203)||(41492894-41492992)
chr2 (126-203)||(4683951-4684028)
chr2 (106-203)||(13344518-13344615)
chr2 (117-203)||(44804588-44804674)
chr2 (106-203)||(30099181-30099278)
chr2 (123-203)||(12170415-12170495)
chr2 (118-203)||(16734817-16734902)
chr2 (155-203)||(41453093-41453141)
[»] chr3 (25 HSPs)
chr3 (103-203)||(10298013-10298113)
chr3 (117-203)||(9111504-9111590)
chr3 (106-203)||(49823380-49823477)
chr3 (107-203)||(19557052-19557148)
chr3 (107-203)||(48340431-48340527)
chr3 (104-203)||(17653746-17653845)
chr3 (104-199)||(40690993-40691088)
chr3 (117-203)||(8817396-8817482)
chr3 (117-203)||(22721965-22722051)
chr3 (117-203)||(37508955-37509041)
chr3 (106-203)||(51406707-51406804)
chr3 (107-203)||(2787832-2787928)
chr3 (107-203)||(6013336-6013432)
chr3 (107-203)||(34080030-34080126)
chr3 (123-203)||(44785412-44785492)
chr3 (117-203)||(4238628-4238714)
chr3 (107-201)||(38964428-38964522)
chr3 (117-203)||(42507365-42507451)
chr3 (106-203)||(8437459-8437556)
chr3 (106-203)||(46208064-46208161)
chr3 (107-203)||(21295326-21295422)
chr3 (115-203)||(42170354-42170442)
chr3 (123-203)||(36095696-36095776)
chr3 (123-203)||(33942948-33943028)
chr3 (155-203)||(35513507-35513555)
[»] chr5 (18 HSPs)
chr5 (104-203)||(41989404-41989503)
chr5 (105-203)||(9395384-9395482)
chr5 (106-203)||(36563537-36563634)
chr5 (105-203)||(13103058-13103156)
chr5 (117-203)||(23359976-23360062)
chr5 (118-203)||(11795202-11795287)
chr5 (106-203)||(17025658-17025755)
chr5 (107-203)||(37148955-37149051)
chr5 (105-203)||(13033085-13033183)
chr5 (106-203)||(21575980-21576077)
chr5 (107-201)||(6126860-6126954)
chr5 (105-203)||(26350348-26350446)
chr5 (106-196)||(37641995-37642085)
chr5 (127-203)||(583023-583099)
chr5 (107-203)||(20848108-20848203)
chr5 (123-203)||(4443994-4444074)
chr5 (166-203)||(38361750-38361787)
chr5 (155-203)||(2629592-2629640)
[»] chr8 (19 HSPs)
chr8 (105-203)||(7785776-7785874)
chr8 (106-203)||(54611-54708)
chr8 (106-203)||(2890161-2890258)
chr8 (104-201)||(39571200-39571297)
chr8 (107-203)||(6552689-6552785)
chr8 (104-203)||(12763651-12763750)
chr8 (105-203)||(7805697-7805795)
chr8 (105-203)||(44498185-44498283)
chr8 (106-203)||(25600999-25601096)
chr8 (102-203)||(32211358-32211459)
chr8 (106-203)||(43199353-43199450)
chr8 (107-203)||(3304278-3304374)
chr8 (123-203)||(13578891-13578971)
chr8 (104-203)||(32114472-32114571)
chr8 (117-203)||(12343150-12343236)
chr8 (117-203)||(31654647-31654733)
chr8 (107-201)||(33289261-33289355)
chr8 (123-203)||(15888368-15888448)
chr8 (104-201)||(7012207-7012304)
[»] chr6 (18 HSPs)
chr6 (105-203)||(26602357-26602455)
chr6 (106-203)||(6330149-6330246)
chr6 (106-203)||(11572144-11572241)
chr6 (106-203)||(13853592-13853689)
chr6 (107-203)||(2830369-2830465)
chr6 (107-203)||(8382969-8383065)
chr6 (104-203)||(8099564-8099663)
chr6 (103-203)||(9644730-9644830)
chr6 (103-203)||(9650747-9650847)
chr6 (104-203)||(33052791-33052890)
chr6 (117-203)||(8417803-8417889)
chr6 (117-203)||(35031011-35031097)
chr6 (118-201)||(28747145-28747228)
chr6 (106-203)||(6068600-6068697)
chr6 (123-203)||(6143588-6143668)
chr6 (117-203)||(17992022-17992108)
chr6 (146-203)||(13043792-13043849)
chr6 (106-186)||(22896513-22896593)
[»] chr1 (22 HSPs)
chr1 (105-203)||(14984871-14984969)
chr1 (107-203)||(27159358-27159454)
chr1 (107-203)||(31842795-31842891)
chr1 (107-203)||(39401966-39402062)
chr1 (107-203)||(44668093-44668189)
chr1 (117-203)||(9981681-9981767)
chr1 (106-203)||(47216698-47216795)
chr1 (107-203)||(11795967-11796063)
chr1 (107-203)||(26471065-26471161)
chr1 (107-203)||(47777481-47777577)
chr1 (104-203)||(1050922-1051021)
chr1 (104-203)||(34042730-34042829)
chr1 (105-203)||(12483626-12483724)
chr1 (117-203)||(44955216-44955302)
chr1 (123-203)||(47588353-47588433)
chr1 (106-201)||(25694355-25694450)
chr1 (127-203)||(23278021-23278097)
chr1 (104-203)||(11897088-11897187)
chr1 (106-203)||(17556786-17556884)
chr1 (105-203)||(47969729-47969827)
chr1 (54-105)||(32887267-32887318)
chr1 (106-202)||(37552176-37552272)
[»] scaffold0009 (1 HSPs)
scaffold0009 (107-203)||(49539-49635)
[»] chr4 (26 HSPs)
chr4 (107-203)||(47833645-47833741)
chr4 (105-203)||(3422095-3422192)
chr4 (117-203)||(5986910-5986996)
chr4 (107-201)||(6121893-6121987)
chr4 (105-203)||(33621830-33621928)
chr4 (117-203)||(43900583-43900669)
chr4 (105-203)||(47838615-47838713)
chr4 (105-203)||(48336297-48336395)
chr4 (106-203)||(3904682-3904779)
chr4 (106-203)||(3993010-3993107)
chr4 (106-203)||(53337404-53337501)
chr4 (107-203)||(3372155-3372251)
chr4 (107-203)||(20538686-20538782)
chr4 (107-203)||(42797766-42797862)
chr4 (107-203)||(46797759-46797855)
chr4 (105-203)||(41469764-41469862)
chr4 (106-203)||(24704404-24704501)
chr4 (126-203)||(33551235-33551312)
chr4 (107-203)||(51894582-51894678)
chr4 (117-203)||(52756709-52756795)
chr4 (123-199)||(7579348-7579424)
chr4 (126-203)||(26231611-26231688)
chr4 (108-201)||(40913190-40913283)
chr4 (117-203)||(41615686-41615772)
chr4 (146-202)||(25855118-25855174)
chr4 (163-203)||(29845679-29845719)
[»] scaffold0482 (1 HSPs)
scaffold0482 (105-203)||(12894-12992)
[»] scaffold0204 (1 HSPs)
scaffold0204 (105-203)||(23819-23917)
[»] scaffold1707 (1 HSPs)
scaffold1707 (123-203)||(1369-1449)
[»] scaffold0464 (1 HSPs)
scaffold0464 (105-203)||(6129-6227)
[»] scaffold0415 (1 HSPs)
scaffold0415 (163-203)||(13782-13822)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 7482357 - 7482259
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7482357 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacc 7482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 38063911 - 38064009
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| ||||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38063911 aatactccctctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 38064009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 1738445 - 1738543
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1738445 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 1738543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 7240881 - 7240783
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  7240881 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 7240783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 9268887 - 9268790
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9268887 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 9268790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 38441580 - 38441495
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38441580 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgac 38441495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 46840990 - 46840894
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  46840990 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 46840894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 1565745 - 1565825
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1565745 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 1565825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 22285829 - 22285733
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  22285829 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 22285733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 23314139 - 23314235
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  23314139 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatatatctagttaaaaattcagtccaaatacattcacttttgttgacc 23314235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 31319415 - 31319495
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31319415 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 31319495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 36016204 - 36016292
Alignment:
Q  115 ctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  36016204 ctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 36016292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 33418496 - 33418410
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  33418496 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 33418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 36583527 - 36583429
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | | ||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||| ||| ||||||||||||||||||||||||    
T  36583527 aatactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattaagtccaaatacattcacttttgttgacc 36583429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 94334 - 94414
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  94334 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacattcacttttgttgacc 94414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 28536750 - 28536847
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| ||||||||||||||||||| |  | |||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  28536750 atactccctccggtcctatttataagagaattttggatcaataaaagttgatgtatctagttaaaaattcattccaaatacattcacttttgttgacc 28536847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 4790368 - 4790282
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  | |||||  ||||||| |||||||||||| ||| |||||||||||| |||||||||||    
T  4790368 ggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaatttagtccaaatacattcatttttgttgacc 4790282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 7269415 - 7269501
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||  ||||||| |||||||  |||| || | ||||||||||||||| | ||||||  | |||||||||||    
T  7269415 ggtcctatttataagagaaagttgggttaacaaaagttgatgcatctggttaaaaattcagtttagatacatcaatttttgttgacc 7269501  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 9575529 - 9575443
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||  || |||  ||||||   ||||||| ||||||||||||||||  |||||| || |||||||||||||    
T  9575529 ggtcctatttataagagaaagtttggtcaacaaaacttgatgtatctagttaaaaattcagtctaaatacgttaacttttgttgacc 9575443  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 40840129 - 40840211
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgtt 199  Q
    ||||| ||||||||||||| |||  ||  |||||||  ||||||  |||||||||||||||| |||||||||| | |||||||    
T  40840129 ggtcctatttataagagaaatttttgtcaacaaaagttgatgtacttagttaaaaattcagtccaaatacattgatttttgtt 40840211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 44397678 - 44397581
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44397678 atactccccccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44397581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 3055691 - 3055592
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3055691 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 3055592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 15896979 - 15896876
Alignment:
Q  100 tgttaaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgtt 199  Q
    |||||| ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||    
T  15896979 tgttaattactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgtt 15896880  T
Q  200 gacc 203  Q
    ||||    
T  15896879 gacc 15896876  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 37990010 - 37990109
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37990010 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 37990109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 37666608 - 37666706
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  || ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37666608 aatactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacc 37666706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 41478637 - 41478735
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  41478637 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 41478735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 44398817 - 44398720
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44398817 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 13197710 - 13197806
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13197710 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 13197806  T

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Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 16044317 - 16044413
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  || ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16044317 tactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacc 16044413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 9047753 - 9047851
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  9047753 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcactttttttgacc 9047851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 16243793 - 16243879
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  16243793 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 16243879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 38917521 - 38917618
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  38917521 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttattgacc 38917618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 12337937 - 12338033
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  12337937 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacc 12338033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 15372356 - 15372260
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  15372356 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctcgttaaaaattcagtccaaatacattcacttttgttgacc 15372260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 6648517 - 6648615
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  6648517 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttatgttgacc 6648615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 41492894 - 41492992
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| ||||||||||||| |||||||  |||||||  ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  41492894 aatactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatctagttaaaaattctgtccaaatacattcacttttgttgacc 41492992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 4683951 - 4684028
Alignment:
Q  126 tataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||| |||| |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4683951 tataagagaattttcggtttacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 4684028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 13344615 - 13344518
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| ||||||||||||||||||| |  |||||||  ||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  13344615 atactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacc 13344518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 44804588 - 44804674
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||  ||| |||||||  ||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  44804588 ggtcctatttataagagaattttaagttaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttatgttgacc 44804674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 30099181 - 30099278
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||| ||||||||||||||  |||||||  ||||||| || ||||||||||| | |||||||||||| |||||||||||    
T  30099181 atactccctccggtcctatttattagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcaatccaaatacattcatttttgttgacc 30099278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 12170415 - 12170495
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||  ||||||  |||||||  ||||||| |||||||||||||||| |||||||||| |||||| ||||||    
T  12170415 atttataagagaaacttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattaacttttattgacc 12170495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 16734902 - 16734817
Alignment:
Q  118 gtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||| |||||||||||||  ||| ||  |||||||  ||||||| | |||||||||||||| || ||||||  |||||||||||||    
T  16734902 gtcctatttataagagaaagttgagtaaacaaaagttgatgtatttggttaaaaattcagtccagatacatcaacttttgttgacc 16734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 41453141 - 41453093
Alignment:
Q  155 gatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | |||||||||||||| |||||||||| |||||| ||||||    
T  41453141 gatgtattttgttaaaaattcagtccaaatacattaacttttattgacc 41453093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 10298113 - 10298013
Alignment:
Q  103 taaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    ||||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  10298113 taaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgac 10298014  T
Q  203 c 203  Q
    |    
T  10298013 c 10298013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 9111504 - 9111590
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9111504 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacc 9111590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 49823380 - 49823477
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  49823380 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 49823477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 19557052 - 19557148
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  19557052 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 19557148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 48340527 - 48340431
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  48340527 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 48340431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 17653845 - 17653746
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| || | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  17653845 aaatactacctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 17653746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 40690993 - 40691088
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgtt 199  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||    
T  40690993 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgtt 40691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 8817396 - 8817482
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8817396 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 8817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 22722051 - 22721965
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  22722051 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 22721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 37509041 - 37508955
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37509041 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 37508955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 51406804 - 51406707
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  51406804 atactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 51406707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 2787832 - 2787928
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||   ||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  2787832 tactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 2787928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 6013336 - 6013432
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  ||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||    
T  6013336 tactccctccggtcctatttataagagaattttgggtcaacaaaagtaaatttatctagttaaaaattcagtccaaatacattcacttttgttgacc 6013432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 34080030 - 34080126
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  34080030 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatcttgttaaaaattcagtccaaatacattcacttttgttgacc 34080126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 44785412 - 44785492
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44785412 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 4238714 - 4238628
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  4238714 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 4238628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 38964522 - 38964428
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    ||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  38964522 tactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttga 38964428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 42507365 - 42507451
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  42507365 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacattcacttttgttgacc 42507451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 8437556 - 8437459
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||| ||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  8437556 atactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttattgacc 8437459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 46208161 - 46208064
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  46208161 atactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 46208064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 21295326 - 21295422
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  21295326 tactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttttgttgacc 21295422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 42170354 - 42170442
Alignment:
Q  115 ctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| |||||||||||||||||||||  |||||||  ||||||| | |||||||||||| | ||||||||||||||||||||||||    
T  42170354 ctggtcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaattcactccaaatacattcacttttgttgacc 42170442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 36095696 - 36095776
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| ||||||||||||| |  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  36095696 atttacaagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 36095776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 33942948 - 33943028
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||  ||||||  |||||||  ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  33942948 atttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattaacttttgttgacc 33943028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 35513555 - 35513507
Alignment:
Q  155 gatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  35513555 gatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 35513507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 41989404 - 41989503
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  41989404 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 41989503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 9395482 - 9395384
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9395482 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 9395384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 36563537 - 36563634
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  36563537 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 36563634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 13103156 - 13103058
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  13103156 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 13103058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 23360062 - 23359976
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  23360062 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 23359976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 11795287 - 11795202
Alignment:
Q  118 gtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11795287 gtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 11795202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 17025755 - 17025658
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  17025755 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtttaaatacattcacttttgtggacc 17025658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 37148955 - 37149051
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||| ||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37148955 tactccctccggtcctatttataatagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 37149051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 13033183 - 13033085
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | | ||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  13033183 aatactccctccgatcctatttataagagaattttgggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 13033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 21576077 - 21575980
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| ||||||||||||||||||| |  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  21576077 atactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttttgttgacc 21575980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 201
Target Start/End: Complemental strand, 6126954 - 6126860
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||| ||| |||||||||||| |||||||||    
T  6126954 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatttagtccaaatacattcatttttgttga 6126860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 26350348 - 26350446
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||| |||||||||  |  | |||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26350348 aatactccctccggtcctatttataaaagaattttgaatcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 26350446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 37642085 - 37641995
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcactttt 196  Q
    |||||||| | ||||| |||||||||||||||||||||  | |||||  ||||||| |||||||||||||||| || ||||||||||||||    
T  37642085 atactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccacatacattcactttt 37641995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 583099 - 583023
Alignment:
Q  127 ataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||| ||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  583099 ataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttatgttgacc 583023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 20848203 - 20848108
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| ||||||||||||||||||||   ||||||   ||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  20848203 tactccctccggtcctatttataagagaattttgggca-acaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttattgacc 20848108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 4444074 - 4443994
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||||||| | |  |||||||  ||||||| || |||||||||||||  |||||||||||||||||||||||    
T  4444074 atttataagagaattttagatcaacaaaagttgatgtatctatttaaaaattcagtctaaatacattcacttttgttgacc 4443994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 38361750 - 38361787
Alignment:
Q  166 ttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  38361750 ttaaaaattcagtccaaatacattcacttttattgacc 38361787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 2629592 - 2629640
Alignment:
Q  155 gatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||| | || ||| ||||||| |||||||||||||    
T  2629592 gatgtatatagttaaaaaattagatcagatacattaacttttgttgacc 2629640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 7785776 - 7785874
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  7785776 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 7785874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 54611 - 54708
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  54611 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 54708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 2890161 - 2890258
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  2890161 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 2890258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 39571200 - 39571297
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39571200 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttga 39571297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 6552785 - 6552689
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6552785 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 6552689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 12763651 - 12763750
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12763651 aaatactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 12763750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 7805697 - 7805795
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||   ||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  7805697 aatactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 7805795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 44498185 - 44498283
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  | |||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44498185 aatactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44498283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 25600999 - 25601096
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||   |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25600999 atactccctccggtcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 25601096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 32211358 - 32211459
Alignment:
Q  102 ttaaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    |||||||||||| | ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||||| |||||||||||| |||||||||    
T  32211358 ttaaatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcatttttgttga 32211457  T
Q  202 cc 203  Q
    ||    
T  32211458 cc 32211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 43199353 - 43199450
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  43199353 atactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 43199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 3304278 - 3304374
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3304278 tactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 3304374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 13578971 - 13578891
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13578971 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttattgacc 13578891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 32114472 - 32114571
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||| ||||||||||  ||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  32114472 aaatactccctccggtcctatttataagaaaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 32114571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 12343150 - 12343236
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12343150 ggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 12343236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 31654733 - 31654647
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||| ||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31654733 ggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 31654647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 33289261 - 33289355
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  33289261 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttatgttga 33289355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 15888368 - 15888448
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  15888368 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttgacc 15888448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 7012304 - 7012207
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    ||||||| || | ||||| ||||||||||||||||||| |  |||||||  ||||||| |||||||||||||||| |||||| |||||||||||||||    
T  7012304 aaatacttcctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatatattcacttttgttga 7012207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 26602455 - 26602357
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26602455 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 26602357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 6330246 - 6330149
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  6330246 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 6330149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 11572144 - 11572241
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11572144 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 11572241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 13853592 - 13853689
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13853592 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 13853689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 2830465 - 2830369
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  2830465 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 2830369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 8382969 - 8383065
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  8382969 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 8383065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 8099663 - 8099564
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  8099663 aaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttgacc 8099564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 9644830 - 9644730
Alignment:
Q  103 taaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    ||||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| || |||||||    
T  9644830 taaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttatgttgac 9644731  T
Q  203 c 203  Q
    |    
T  9644730 c 9644730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 9650847 - 9650747
Alignment:
Q  103 taaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    ||||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| || |||||||    
T  9650847 taaatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttatgttgac 9650748  T
Q  203 c 203  Q
    |    
T  9650747 c 9650747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 33052791 - 33052890
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||  | ||||| |||||||||||||||||||||  | |||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  33052791 aaatactccatccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 33052890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 8417803 - 8417889
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  8417803 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttgacc 8417889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 35031011 - 35031097
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  35031011 ggtcctatttataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 35031097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 28747145 - 28747228
Alignment:
Q  118 gtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    |||| |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||    
T  28747145 gtcctatttataagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttttgttga 28747228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 6068697 - 6068600
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||| ||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||||    
T  6068697 atactccctccggtcctatttataagagaattttgagtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttattgacc 6068600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 6143668 - 6143588
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||||||||||   |||||||  ||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  6143668 atttataagagaattttgggacaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgttgacc 6143588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 17992108 - 17992022
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||| | ||||||||||||||||| ||||||    
T  17992108 ggtcctatttataagagaattttgggtcaacaaaaatcgatgtatctagttaaaaattcaatccaaatacattcacttttattgacc 17992022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 13043849 - 13043792
Alignment:
Q  146 acaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||  ||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  13043849 acaaaagttgatgtatctagttaaaaattcaattcaaatacattcatttttgttgacc 13043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 22896593 - 22896513
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatac 186  Q
    |||||||| | ||||| |||||||||||||||||  ||  |||||||  ||||||| |||||||||||||||| |||||||    
T  22896593 atactcccgccggtcctatttataagagaattttttgtcaacaaaagttgatgtatctagttaaaaattcagtccaaatac 22896513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 14984969 - 14984871
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  14984969 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 14984871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 27159358 - 27159454
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27159358 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 27159454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 31842795 - 31842891
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31842795 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 31842891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 39401966 - 39402062
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  39401966 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 39402062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 44668093 - 44668189
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44668093 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44668189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 9981767 - 9981681
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9981767 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 9981681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 47216698 - 47216795
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||| | |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47216698 atactccctccggtactatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 47216795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 11796063 - 11795967
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  11796063 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatgcattcacttttgttgacc 11795967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 26471065 - 26471161
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| ||||||||||||||||||| |  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  26471065 tactccctccggtcctatttataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 26471161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 47777481 - 47777577
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  47777481 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttcaaaattcagtccaaatacattcacttttgttgacc 47777577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 1051021 - 1050922
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| |||||||||||||||||||||  || ||||  ||||||| |||||||||||||||| ||||| ||||||||||||||||||    
T  1051021 aaatactccctccggtcctatttataagagaattttgggtcaactaaagttgatgtatctagttaaaaattcagtccaaatgcattcacttttgttgacc 1050922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 34042829 - 34042730
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||| | |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  34042829 aaatactccctccggttctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacc 34042730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 12483626 - 12483724
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| ||||| ||||||||||  |||||||||||||||||||||||    
T  12483626 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttcaaaattcagtctaaatacattcacttttgttgacc 12483724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 44955216 - 44955302
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  44955216 ggtcctatttataagagaattttaggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 44955302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 47588353 - 47588433
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  47588353 atttataagagaattttgggtcaacaaaagttgatgtatctaattaaaaattcagtccaaatacattcacttttgttgacc 47588433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 25694450 - 25694355
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    |||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  25694450 atactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttattga 25694355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 23278021 - 23278097
Alignment:
Q  127 ataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||  |||||||  ||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  23278021 ataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacc 23278097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 11897187 - 11897088
Alignment:
Q  104 aaatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||| | ||||| ||||||||||||| |||||||  |||||||  |||||||   ||||||||||||||||| ||||||  |||||||||||||    
T  11897187 aaatactccctccggtcctatttataagagaaatttgggtcaacaaaagttgatgtatccggttaaaaattcagttcagatacatcaacttttgttgacc 11897088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 17556884 - 17556786
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaataca-ttcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||  ||||||  |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||    
T  17556884 atactccctccggtcctatttataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttaacttttgttgacc 17556786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 47969827 - 47969729
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||| | |||||||| |  |||||||  ||||||| ||||||||||||||||  ||||||||| |||||||||||||    
T  47969827 aatactccctccggtcctatttataaaataattttggatcaacaaaagttgatgtatctagttaaaaattcagtctaaatacatttacttttgttgacc 47969729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 32887267 - 32887318
Alignment:
Q  54 atgacaaatgtaatctttgaccaattaaatgacaaattttagtatatgttaa 105  Q
    |||||||||||| | |||||||||| ||||||||||| ||||||||||||||    
T  32887267 atgacaaatgtattttttgaccaataaaatgacaaatcttagtatatgttaa 32887318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 37552272 - 37552176
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    |||||||||| ||||| ||||||||||||| |||||||  ||||||    |||||| | |||||||||||||| || ||||||  ||| ||||||||    
T  37552272 atactccccccggtcctatttataagagaaatttgggtcaacaaaaatgaatgtatctggttaaaaattcagtccagatacatgaactgttgttgac 37552176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 49635 - 49539
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  49635 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacc 49539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 47833741 - 47833645
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47833741 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 47833645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 3422192 - 3422095
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3422192 aatactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagttcaaatacattca-ttttgttgacc 3422095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 5986996 - 5986910
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5986996 ggtcctatttataagagaattttgggtcaacaaaagttgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacc 5986910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 6121893 - 6121987
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  6121893 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttga 6121987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 33621928 - 33621830
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  33621928 aatactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 33621830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 43900669 - 43900583
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||||||||||| |||||||  ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  43900669 ggtcctatttataagagaattttgggttaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttacttttgttgacc 43900583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 47838615 - 47838713
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  47838615 aatactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 47838713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 48336395 - 48336297
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  48336395 aatactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 48336297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 3904682 - 3904779
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3904682 atactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtatttagttaaaaattcagtccaaatacattcacttttgttgacc 3904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 3993107 - 3993010
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||  |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3993107 atactccctccggtcttatttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 3993010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 53337501 - 53337404
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | ||||| |||||||||||||||||||||  | |||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  53337501 atactccctccggtcctatttataagagaattttgggtcaataaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 53337404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 3372251 - 3372155
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3372251 tactccctccggtcctatttataagataattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 3372155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 20538686 - 20538782
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  ||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20538686 tactccctccggtcctatttataagagaattttgggtcaacaaaatttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 20538782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 42797862 - 42797766
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  42797862 tactccctccggtcctatttataagagaattttaggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 42797766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 46797855 - 46797759
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  46797855 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatatatctagttaaaaattcagtccaaatacattcacttttgttgacc 46797759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 41469764 - 41469862
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| ||||||||||||||||| |||  |||||||  ||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  41469764 aatactccctccggtcctatttataagagaatttttggtcaacaaaagttgatgtatctatttaaaaattcagtccaaatacattcacttttgttgacc 41469862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 24704501 - 24704404
Alignment:
Q  106 atactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||| | | ||| |||||||||||||||||||||  |||||||   |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  24704501 atactccctccgatcctatttataagagaattttgggtcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 24704404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 33551312 - 33551235
Alignment:
Q  126 tataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||||||||| |||||||  ||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  33551312 tataagagaattttgggtttacaaaagttgatgtatctagttaaaaattcagtcaaaatacattcacttttgttgacc 33551235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 51894582 - 51894678
Alignment:
Q  107 tactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||| | ||||| |||||||||||||||||||||  |||||||  ||||||| | |||||||||||||| |||| |||||||||||||||||||    
T  51894582 tactccctccggtcctatttataagagaattttgggtcaacaaaagttgatgtatctggttaaaaattcagtccaaaaacattcacttttgttgacc 51894678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 52756795 - 52756709
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||| ||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  52756795 ggtcctatttataaaagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttatgttgacc 52756709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 7579424 - 7579348
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgtt 199  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||| | ||||||||||||||||||||    
T  7579424 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcaatccaaatacattcacttttgtt 7579348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 26231688 - 26231611
Alignment:
Q  126 tataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||| |||| |||||||  ||| ||| |||||||||||||||| ||||||||||| ||||||||||||    
T  26231688 tataagagaattttcggtttacaaaagttgatatatctagttaaaaattcagtccaaatacattcgcttttgttgacc 26231611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 40913190 - 40913283
Alignment:
Q  108 actccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttga 201  Q
    |||||| | ||||| ||||||||||||| ||||| |  |||||||  ||| |||  ||||||||||||||| ||||||||||||||||||||||    
T  40913190 actccctccggtcctatttataagagaaatttggatcaacaaaagttgatatatccagttaaaaattcagtccaaatacattcacttttgttga 40913283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 41615686 - 41615772
Alignment:
Q  117 ggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||| |||||||||||||  |||| |  |||||||  ||||||| |||||||||||| ||| |||||||||| |||||||||||||    
T  41615686 ggtcctatttataagagaaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttttgttgacc 41615772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 25855174 - 25855118
Alignment:
Q  146 acaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgac 202  Q
    |||||||  ||||||| | |||||||||||||| |||||||||| ||||||||||||    
T  25855174 acaaaagtcgatgtatttggttaaaaattcagtccaaatacattaacttttgttgac 25855118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 29845719 - 29845679
Alignment:
Q  163 tagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  29845719 tagttaaaaattcagttcaaatatattaatttttgttgacc 29845679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 12992 - 12894
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||||||||||||||   ||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  12992 aatactccctccggtcctatttataagagaattttgggtcagcaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 12894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 23917 - 23819
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  23917 aatactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 23819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1707 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 1449 - 1369
Alignment:
Q  123 atttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    |||||||||||||||||||||  |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1449 atttataagagaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacc 1369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 6129 - 6227
Alignment:
Q  105 aatactccccctggtccgatttataagagaattttgggttcacaaaagcagatgtatatagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||| | ||||| |||||||||| ||||||||||  |||||||  ||||||| |||||||||||||||| || |||||||||||||||||||||    
T  6129 aatactccctccggtcctatttataagaaaattttgggtcaacaaaagttgatgtatctagttaaaaattcagtccacatacattcacttttgttgacc 6227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13782 - 13822
Alignment:
Q  163 tagttaaaaattcagttcaaatacattcacttttgttgacc 203  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  13782 tagttaaaaattcagttcaaatatattaatttttgttgacc 13822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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